Gene detail

Detailed information of XP_074617062.1 in Acropora palmata

Genomic Location: NC_133884.1:1600848...1616204
NR annotation: XP_029186560.2, uncharacterized protein LOC114954197 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074617062.1

ATGCACAGCGTAAGGTATCTGTCTTATCATCAATGGAAGGAGAGTAAAGGCGACACAAATAAGTCTTCAACCTACCACCAGAAACTCCTCGCGAACGTCGAAAACCTCGAGACTAATGTGGGAGCAATCGACAAGCTTATAACAGGTTATTTAGATGCTACCAAAGCCTTCTGCGGGGCAGGTTCCCAGCTAGCTGAGGCATTCTCGACGGTTTTAAAGGAGACCCCTCTACTCGAAATTTCACAACAGCTGAAGCAAGTTGTTGAAGAAATTGACCATGTCGCCCATAAGTCGAGTGTCCATATCACAAGTCAGATCCTTGGGACGCTTTGTGAGTTTACAGCGACTCTTCCAGGGCTTAAAAGAGCAATTGAAGCCCATAAAAGAAGCGCACAGAATTATGAATCGTGTCAGGAAAACCTAGAAGTGTTGGAAAAAGATGACAGTGCGGTAAACAGCGATTCCATGAGACTCAAAACAACCAGGCAGCGCTTTCGTGCTGCAACGGAAGAGCTTGTGACGGAAGAGGAGAAATTATACAGAAGCTTTTCAGAAGTCGAAGAAAATCGCGTGAAGTTGTTGGGTTCTTGTTTTCTGTCATTGTTACAAGTCCAGGCGCAGTTTTTGCTTTCATCAGCTGACCTGACTTCATCACTCGGTGGTTTTCATGAGATTGGTGACTATCTGCGGGACAGAGAAGTCACACTGGCTCTCAAGGATGCCACAGCAACCTGGATTTCTCTTGCTCAATCAAACCAAGCATTGCGTCATGGTTATGTGTTGTCAAGAGAGCAACTTCAGGTCTTGATGCAAATTGGCCAGGGTGAACTAACAGATCCAGATAGAAAAGAGCTGATACAAAAAGTCAATACTTTACTTAAGAATTACAAAAAAGAATTTGAACGAGCACCAACACCGGAGGCAGACATACCTGCAGGCTTTCACAGGAATCCCAGAGGAATAGAGCTGGCTCTTAAGGGATGCTGCAGTGAGATGGAGGCCATGGCTGCTGGAGGTGTCACAGAAGTATCCACTGCACAGGCCATGGAACAACAAATTCTTAAGTTTATTCCCAAATTGCAGTTAACAATTGGATATGTTATGACTGAAATGTGTTCTTCACCAAGCAAAGCCAATGATTATTTTAAGTCCAAAATGCACTGCATCAGAGATCTTGTGAGTTCAGTAGCCAAACAAAACGACATTCCCCTTAACTGTGAAACTCTTGATATGTTTGTTCTGATGGTGCTGTATGAGGCCTGTTCTCCGGTGTCAAGTTCTGCAGCAAAGACAGCTGTGCAGTTGCTCTTTGGCAGGGCTCACTTGGTTACTGTTAAGCCAAGCAAAGAGAAAAACACTCGGCTGGCCAGAGTTTATGTTAAGGGAGCATCAGTCCACGTGGAAGTTTCTAACTCATGGATTATCACAGAAGATACTTCAACCTTTTCATGTCTTTTGAAAGATCTAGACATGGCTTCACCCCTTGGCACTGTTGATTCATTGTATACATCTAAGTTTAGTTTGATGGATTATCTAGAAGACAAGGAAAGACCTTTGCCTGCCATTCACATAAAACGCCGAGACTTGTCAAAGCCTCCAGTTTCACTGTCTAAACTGGAGACATCACAATGTTCCAAGCACAAGAGTTTTAGAAAGACTTTCACCAAAGCAACGTCTAGGATATTTTCGAGGAAAATGGGAACTGCTAAGGCAAACAACCTTCCAAATGCTGGAATTGATGCGGGCAATCAGGTCGCTGTATCTGGTGCTGGGACTAGGAATGAATTGATAGGAAACCACACTTCTGTTGCATCAAGCACTGACACAGGCGATGACCATGATACGGACATTGAGGACCCGTTACCTCTGCCTCCACCACGCCCAAGACACTGGGCAAAGAGAGCAAAGGAGCAATCCATGATGCCAGATTGCAACAGTTCTAGCACAGTGAAACCTGACAACGAGCACAGCAAGACTGACAGTGCAAGTGACTGGTCAAGATCAATTCCTCAATTCCCATTGCCAACTTTTAAATCAACTATGCAAAGTTGTCAAAGTGAATTGTCCTTGGCTTCTCAAGAGGAGTTAACAGAGGTTATTAACTTTCTTTCTGGTGCTCCCATTAAACGTCGACTTTTGAATGATGACGACTCCAATAGAAGTGTGGCAGAAAGCCACTTGACACCAGTTGATAGTGGCTTGGGGAGCATATACAGTGGAGCATTGAGCAGTGTAACACAAGGCAGCGTTGCTCCTGTGCTGGTTGAAAGCAAAATAAATGACAAAACTAAGCAACCTGAAAACATGTTGGAAACAAAGGAAAGTTCTTCTAGTCACAATTTGGACAATGAGATGTCCCAGAACAGAGAGAAAACAAAGATGGTCTCTATGGAGACACAGACCTCTCCAACAACTGAAGTTTGTCCAGTAGTGATTGACAAACCCACCAATGGCAATGGCCAGAAAAGGGATCAACGCCAAGACTCTGGTGAAAAGAACAAACGCAATAGCCAGGCGTCGTCCAAAGTTGGTAGGAAATATAAAAATAAAAAGGACAAAAACGTTGATGCTAATACAGAAAGCAAAGAAAAAACTGCAAGTCTTCAATCAGCCTCACGCCAACAGAAGAAAGAGAGTAGCCCCGTAAATATTGTTAAAATAAATGCCCCTGTGACATCACCAACTCCAACTTCAAGTGCACAAGATGTAAAACAAGTAGAAGCGATAAAGAAAATCAGTCCAACACATGTGACAGTTAGCTCTGACAAAAGTGATGACAGTAAAACTGTCTCCATCTCTAGAAGCTTAAGGAGTGTGTGGGAAAACGCTAGTCCTCCAGCTGATGGGTTTGATGTTTTAAGCTCCAAGGAGGGCTCACCGCTGCGCAAGAAAGACATTCATGGTTCGCAGGACACGCTTTATCACAGCTGTTGGTCCCTCTCTGATTTTCCTGGAAACAGCAACAATGGGGATGACGAGAAAGAGGATGCAAAGAGTCTGAATGAGAGCATGTTGCCTAGCAACTCAAGTACAGGACTACTGGATCTTGGTTTAAAGTGGCCAAGTTACGGGAACGGTGTCCATGGAAATCCTGTTTGGGCCAATATCCCAAGTATGTCTGACAGCAACTGGAGCCAATCCCAAGAAGCTCTCAGTGAGAGCGCATCAGGGAGAGGGAAAAGTGTTTTCTCACTTGGATTGGGCATCACTGGCCCAGATATGCTAGCTGCCGCAAGAGGAGGAAGTTGTGATGCAGTGCACAATGAAAGAATGAGCTTCATGCCCAATGTTGGAAAGCCATGGAGCACGGAAAACTTGGCCCAAACGACTCCTTGGCCGACTCATGACTCCTCACCACCCCTGCTTTGGTCCAAGGCAGCTTCATTGACAGAAGAGACATTTAGACCGCAACAGCATCAGCATCCCCTTCCATCCCAGCACTTTAGTGATCCTTTCCTTCCTAGGGAGAATTATTGGCTGCAAGGGAGGGGCCCAACTGCTGCATCAGCGTATCTTCACCCCTCCCATGCACGATTCAATTCAAACCTACAGCGTCAGCGTGCTTTTGATAATGTGCAGTCACATGGTATGCTTGGGAATTTACCTCGAGGGCATAGCACAACAAGTATCCAGCCTTCCTTTCATCCTGGCATAGCAGGATATGGTAAACAAAGCCAGCCAGTCACACGAAGCCACCTTCAGGTCCCTGGTCATTTCGCCATTGGACATGGCTCTCATCACAACTCGAACCCCCGTTTTTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007211 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15923 all species →	DUF4745	Domain of unknown function (DUF4745)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031813 all species →	Domain	Domain of unknown function DUF4745	Interproscan
IPR043385 all species →	Family	Granule associated Rac and RHOG effector protein 1	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15703 all species →	RIKEN CDNA 4931406P16 GENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016601 all species →	Biological Process	Rac protein signal transduction	Interproscan
GO:1905762 all species →	Molecular Function	CCR4-NOT complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26671	GARRE1; granule associated Rac and RHOG effector protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074617062.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

79TPM > 0

2Conditions

92.3Max TPM

42.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	43	37.27	77.09
all_coral_tissue · baseline	38	36	48.17	92.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	77.09
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	63.92
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	63.14
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.63
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.48
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.46
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.06
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.63
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.57
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.44
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.17
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	54.59
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.91
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	49.11
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.07
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.69
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.98
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.02
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.21
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.81
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.06
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.42
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.88
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.68
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.02
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	32.54
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.75
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.76
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.62
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.71
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	28.38
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.31
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.47
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.84
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.96
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.11
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.85
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.63
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.52
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.18
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.21
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.63
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.06
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	92.31
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	76.13
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	76.10
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	73.86
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	73.79
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	72.32
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	66.80
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	64.45
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	62.55
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	62.46
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	60.55
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	60.40
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	58.97
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	58.62
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.96
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.63
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.37
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.20
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.47
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.47
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.21
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.77
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.75
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.81
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.09
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	41.34
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.51
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.61
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.59
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.80
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.29
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.36
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.35
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.67
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.62
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.39
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.