Gene detail

Detailed information of XP_074617154.1 in Acropora palmata

Genomic Location: NC_133884.1:1744224...1765497
NR annotation: XP_044172348.1, integrator complex subunit 8-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074617154.1

ATGGCAATGGAAAACGACAAGGCTAGATCAACTTTAAAATCAGCTGAATCTTCGTTCGAGCTCTTATTTGATACAACTTGTGAAGTATTGAAGAAGCACTTGGAAGAGAAAAGAGCAGAGCCATCTGCCACGCAACTAATTGTTCAAATTGTGGAACGTTCTGGGCTGTTCAATAATAATTTGAATACAGGTGGAGAACTACCAACTGCTACTGAGAAAAAAAGGGCACAGGGTCTCTGCCTTTTAGCTTTGAGGGTTTTATCACATTTGCAATGGAATTTGGAAGCCTTAGAGGAGAATTTGTCTCTTCAATGGCAGAATTTTCTTCTTGGGGAGTTTTTGAAAATGGCATGCCCACTGGATTGGTTGTTACAAAACAGTGTTGACATAAACACGTTGGATCAAAAAACGGCAATGGCACTCATCATCTACCACAGATGGGTGATTAGAACGTTGTCTCAACGCTTTCTTCCAAATGTTGACAAATCTACTAATATTGGGGTCACAGCCGAGAACTTGGCAAATGAGAATATACTCAGAAAGCTTCAAGAACAGCTTCCCACCTCTATTCATATTCTTGAGCAAGCTCTCGCGGTGACAGAAGACATGACTCTTCCAACAGGACCTTCTCTTATCTCTGAATCAAGGAGGAAGGAGAATATTGAGCATGAAAACACTCCCGCTGATGCTGAGACATTAACTGATAACATTTTGCAGAATGTAGCTAGCAGTAGCTGTAATGAAAACAAGGTGGAGAATGAGGCAGCCATCAAGAATGGTTCTAGTGAGGGAAGCAATGGTGGTGACATCAAGCAAATTACAAACACATGCACTAAAGAAGAGGTGGTTAATAAAGTGAAGAAGGATGATATTGTTGCTCAGGTTTCCTTTGACTTAGGAACTCTTTATTTCTACCAAGAAAAATTCCAGCAGGCTGTGAAAATGTTTGAAAGTTGCAAGAATGCCCAGTGTTTGCAGTCTTCATTTTATACTGTGAACAAGGATACGTTGTTGGGATACTACATGGCTTGCTGTGGACTAACTGACATTCCTCCGTCAGCAACTAGACCATCTCTAGAAGCCAGCAAACCTTCTTTAATGACAAGGCTAGAACATTGCCGCCACTCTGGTTATCAGGATATCATTGCATTGCTCTTGGAAGACAACGCCACATTTGAGCTGCCCCTGGAGTACAGGGAAAGCTTAGTTAGTGAATTAAAAACCCCAAGCCGTAGAATGAGTGATGATGGAGAGGTGGCTGCGAACATCAGTTTAGACTGGAAGGTCTTGATTTGTAATATCATCAGGGATGTTCTTCAAGGTCGACCTACACACCCTGGGTTTTTGCTGTCCTTGCGAAATTGCTCTCAGGCGAAGTTGGAGGTTATTTTTTCTCTTTGTTTACAATCACTGCCAACTGATGGAGGCTCTCCATCCCAAAATATAAAGGAAGGCAAAAGATTCAAACTGCTAAAATCATTTGTTCAGCTGATTACATGCAATTGTGAGCTTGTAAATGCTTGGGAGATTGCCAAGAATTCTGATGCAAAAATCTTCACAGCAGAAGAGGAGGAAGCAATGGATGTCAGTGAGCCAGGACATAACACACCTTCATCTAATGAGCTGACAACATCACAAGCTTTTTCACTCAAGCCATCAAAGATAGAAGCTGCAACAGAGGAAGAAAGGAATGAAATGGAAAAAGGTTTACTTCAGGATAAGCTAAGGCACACAGAGGACCCTGTGGAAATCAGCACACTTGTGGAACAACTGCAACAACTTGACAAAGAACGAGTTTCTGAGGAATTTCTGTGTGTGTTATATAAGAGTCATCTTGAGGAGATCAAGAATCCCCAACAGCAAGACACTTTGCATGTTCTCTTTTCCAAAGCATTGCAGTGCTCTGTTTATCAGGAATACAAAACAGCTTCTCAACTGTTTGCCTATGCCCTTGGAATGGTGAATGCTGTTGCAGGTCGCAATACTGGGAGCAACCACTTAGATAAAGTGAAGGCTGCTATTCATCAAGAACTTCTTGTGCTTGACATTTGTCAGGAACCACAAAACAAAAGAGCAGATGAGCTTTCAAACAGAGTGAAGTCTTACATGTGGCAAACTGCTTCAGGCACAGCAGAAGTTCACATCGAAGAACAAGTGAATGCATTTCTTCTTAACAGCAAAGAGTGGGAACTTTTAGCAGAGATAAGGGTTGATGAAAATGCACCAACTTTGGATCATAGATCTCTCAGTAGTTTGCTGGCATCCACCTGCTGTTCTTTGTCCAAGCCCCAGGGATGGAGAAAGCCAGCCAGGAATCTGTGGGATGGTGTTTTGAAGATATTCACCAATAGCAATGGACAGCAGAAGAGGCCTGCTGATGGTGGTCCAGGAGTTGTGGTTACGCGGACTGCAAACATACTAAAACTGACAAACTTCATTCATTTTGCACGCAAAATAAAGGAGGAGACTGTTCTGACTGTATTGATATCAAGTTTGGCCAGATTGCGTAATACATCCGGCAAGTTACAGGCAGATGAATCAGGCAATCAGAAAGATATATCAAGTTCACATAGTCATCTGTGGCCCACAACTATTGCAAATGCAGCTAGTATTAATTTTGATCACATTGGTTTGGCTCTGTCAGCTGTTGTCCATCATGCACTTTCTGTACAGCATCACAATGTTTCATGGCTTCAAACTCTGGCTGACATCTATCTGGATTCTGGCAATTATTCATCTGCGCTGCGCTGTTATCTGGAAGCAGGTGCAGTTGCTTCCTCATTCTTTCACTCAGCAGTTCCAACATCTGTCTGGGATGATCAGGTTTACAGGAAAATGGTGACTTGTTGTTCAGCAATGAAAGCCCATGTTCAGGCAGCATTACTTTGTCAGTGCATGGAAGATAAAGATTATACAACAGCATTCAAAGCACTACAACAAGCTTCATCAGCAAGTTCTGATGCAATGGATCTCTACTATTCCTTCTTCTGGGACATTGCCTTGCTGGAATATTTAACATATACTCATGCTAAACGTGGACAAAGTGATAAGAAAATGCTTACTGTGCAAGCCATAAGTCAACCGGAACTTAATATTTTCAATTCATCTGAACTCCTTCAGCACACAGAACATTCCAAAAAAACAAAGTTATTTCGAACACTTGCAAAACAATACCTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q75QN2	Integrator complex subunit 8 OS=Homo sapiens OX=9606 GN=INTS8 PE=1 SV=1
Q80V86	Integrator complex subunit 8 OS=Mus musculus OX=10090 GN=Ints8 PE=1 SV=1
Q4V847	Integrator complex subunit 8 OS=Xenopus laevis OX=8355 GN=ints8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002649 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_074617154.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR038751 all species →	Family	Integrator complex subunit 8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13350 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13145	INTS8; integrator complex subunit 8	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074617154.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

66TPM > 0

2Conditions

39.4Max TPM

15.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	35	14.47	39.44
all_coral_tissue · baseline	38	31	16.66	36.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.44
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.61
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.60
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.23
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.22
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.09
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.01
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.80
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.95
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.56
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.48
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.16
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.12
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.07
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.14
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.04
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.70
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.65
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.14
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.74
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.71
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.60
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.29
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.02
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.10
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.92
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.99
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.93
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.71
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.59
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.18
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.99
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.66
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.51
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.46
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.65
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.12
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	26.26
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.68
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.06
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.78
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.52
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.24
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.92
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.38
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.33
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.16
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.04
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.86
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.35
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.92
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.98
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.86
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.34
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.49
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.22
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.56
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.01
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.08
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.13
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.08
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.82
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.45
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.26
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.61
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.91
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.