Gene detail

Detailed information of XP_074617483.1 in Acropora palmata

Genomic Location: NC_133884.1:25451558...25467940
NR annotation: XP_029180904.1, Bardet-Biedl syndrome 2 protein homolog [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074617483.1

ATGCTTGTCCCGATTTTTACGCTCAAATTAAACCACAAAATACACGCACGTACTGCGGCTTTGGGACGGTATGACGGAAGGCATCCCTGTTTGACTGGCGCAACCACCGCTGGAAAGGTGTTTATTCACAATCCTCACTCTAGTGCACTGCAAGGCGGCCGTGCAGTGGCTAGTCACAGCAATGACATCAGTATCTTGAACATCAACCAACAAGTGTCTGCTGTAGCAGCTGGTCAGCTGAATGACTCAGGATGCGATACACTCCTTATTGGAACACCTACAAACTTTTTGGCCTATGATGTGGAGAACAATTCTGATCTCTTCTACAAGGATGTCGCAGATGGTGCAAATTCCATAGTAACGGGTAGGCTTGGTTCACTTGAAAATCCTTTGGCAATAGTTGGCGGAAACTGCTCAATTCAAGGATTTGACTTTGAAGGAAATGATGAATTCTGGACGGTGACTGGAGACAATGTGTGCTCATTGGCAATGTGTGACTTCAGTGGAGATGGAACCCTTGAGCTGTTGGTTGGATCTGAAGATTTTGACATTAGAGTTTTCAAAGAAGATGAAATTATTGCAGAGATGACTGAAACTGAATCTGTTACTTCTCTGTGCACATTACATGGATCAAAGTTTGGTTACGCACTTGCAAATGGAACTGTTGGAGTGTATGACAGGACAGCAAGATACTGGCGAATAAAGTCCAAAAACCAAGCTATGTCCATTCACAATTTTGACCTTGACTCAGATGGAGTACCAGAGCTCATCACAGGCTGGTCTAATGGAAAGATCGATGCTCGAAGTGACAGAACGGGAGAAGTCATTTTCAAAGACAACTTCTCTGTGGCTGTAGCCGGTATCCTGGAAGGAGACTATCGTTTGGACGGAAAAGTAGAACTCATCTGTTGCTCAGTGGAAGGCGAAGTTCGTGGATATCTACCAGCGTCTCCAGAGATGAAGGGGAATTTGATGGATGTAAATCTTGAACAAGATTCTCTCCGAGAGTTGGCCCAAAGAAAGCAGAATTTACTGCTCGAACTGAAAAACTACGAAGAAAATGCCAGGGTAGGAAAAGGTGGAGGCCAAGAAGTTGACCAATCACAGCTGGGCATCATCCCTGCCAACACACAGCTTCAGACCTCACTGTTAGTGAATCCAGGTAGCGAACAAGTGCAACCGCATGTAGAACTCTCCATCTTGACCACTAATGAAACCGTCATTCGCACCGTCATGATATTTGCTGAAGGAGTGTTTGAAGGGGAAAGCCATGTTGTACATCCTTCGCAGCAAAATCTCAAATCAACGCTACAACTCCCAGTTTTTCCTCCAAAGGATATACCCGTGGACCTGCACATCAAAGCTTTTGTTGGCTACAAATCCAGTTCTCATTTTCACGTGTTTGAGCTTACAAGACAACTTCCAAGGTTCACTTTGTACATACCATGCCCCGATGGTTATGCCGAGCCGAAATCTTACTGCACCTTTCATATAAACGAAAGAATCAACCGGGTTGTAATGTGGCTCAATCAGAATTTTCTTCTCCCCGAGGAGATTGAAGGCAAAGATACTGCACTGGACATCATGTTTTTGTCGCTGCGAACTGGTAATCCTGTGGCCATCAAAATGGACCAGAGCGGAAACGTTACCATAAAAACTGATGACATGGATTTAGCAGGCGACATCATTCAAGGAATGGCGACTTTCTTAGGAATAGAGGATTTATTGTCCACCGCAGAATTTCCAGATCATTTGGAGGAAATTCGTGCCGTTTTATTGAAGGTTGATGAGCTGCATTCTGTGAGACAGAAGCTGACAGCAGAGATGGCGGACCACTCCAACTTGATCAGAAGTCTAGTTGTGAGAGCCGAAGATGCCAGACTAATGGGAGACATGAAGAATATGAGAAAAGGCTACATGGAACTGTACGACTTGAACAGAGATTTAATCAATGGATACAAGATCAGATGTAACAACCACAATGAACTACTGTCCTGTTTAAAACTTGTTAATCAGGCTATTCAGCGAGCTGGCAAGCTGCGAGTTGGCAAGGCAAAAGCTCAGGTTATTGCAGGATGCCGACAAGCTATCAAAAACAACAATGTCAATGGCTTGTTCAAGATTATCAAGGCAGGCTCCTTGTAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q9CWF6	BBSome complex member BBS2 OS=Mus musculus OX=10090 GN=Bbs2 PE=1 SV=1
Q98SP7	BBSome complex member BBS2 OS=Danio rerio OX=7955 GN=bbs2 PE=2 SV=1
Q99MH9	BBSome complex member BBS2 OS=Rattus norvegicus OX=10116 GN=Bbs2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14782	BBS2_C	Ciliary BBSome complex subunit 2, C-terminal	Family	Interproscan
PF14781	BBS2_N	Ciliary BBSome complex subunit 2, N-terminal	Repeat	Interproscan
PF14783	BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029333	Domain	Ciliary BBSome complex subunit 2, C-terminal domain	Interproscan
IPR029430	Domain	Ciliary BBSome complex subunit 2, N-terminal	Interproscan
IPR016616	Family	Bardet-Biedl syndrome 2 protein	Interproscan
IPR029429	Domain	Ciliary BBSome complex subunit 2, middle region	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR028994	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32465	BARDET-BIEDL SYNDROME 2 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0034464	Cellular Component	BBSome	Interproscan
GO:1905515	Biological Process	non-motile cilium assembly	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0031514	Cellular Component	motile cilium	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16747	BBS2; Bardet-Biedl syndrome 2 protein	-	Cilium and associated proteins	ko03037	deepkoala