Gene detail

Detailed information of XP_074617868.1 in Acropora palmata

Genomic Location: NC_133884.1:18144238...18154724
NR annotation: XP_044174525.1, 1,4-alpha-glucan-branching enzyme-like isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074617868.1

ATGAGGCGAACGAAAGCACAACGGCATAATTTACAAAAGTTTTATTCCCAAAAGATGGCAGATGATCAAATAGTTCCACACTTCTCCAGATTTCTTCATGATGATCCTTATGTGAAACCTTACCAAACTGAGATTGAGAGAAGGTACAAGGAATTTTGCAATCTCAAGAGACGGATAGAGGAGCATGAAGGTAGCCTGGAAAAGTTTTCAAAAGGTTATGAGAGATTTGGAATCAACAAGACGTATGAGGGTGTCACTTATAGAGAGTGGGCACCGGAAGCCAAGGGCTTGTATCTCATCGGAGATTTTAATGGCTGGTCAAGGACTTCACATCCTTGTACAAAGAATGAGTTTGGTGTGTGGGAGCTTACATTACCATATAAGGAGGATGGCTCATCTCCAATCCCCCATGGCTCTAAAGTAAAGGTTGCAGTTCAGCTAGAGAATGGTGATTTAGTTGATCGTATTTCTCCATGGATTCGTTATTCAGTTTGCCCAGACAATAGCATTGTTTATGAAGGTGTGCATTGGGATCCTCCACAGCCCTACCAATGGCAGCACAGTAGGCCCAAGAAAACTTCGGGCCTGAGAATCTATGAATGTCACGTTGGGATTGCTTCAACAGAACCAAAAGTTGCGAGTTACAAACATTTCACGTACGATGTTATTCCAAGAATAAAGAAGTTAGGATACAATTGCATACAACTGATGGCTGTCATGGAGCATGCATACTACGCTTGTTTTGGATATCAAGTCACAAACTTCTTTGCAGCTTCCAGTCGCTATGGAACACCTGATGAATTAAAAGAACTGATTGACGTTGCTCATGGCAATGGAATTCTAGTCCTTTTGGATGTGGTGCACAGTCATGCAGCAAAGAATGTTATGGATGGACTAAATGAATTTGATGGTTCACAAACATGTTATTTTCACAATAATAGTCGGGGAGTCCACACTCTTTGGGACAGCAGACTCTTTGACTACACAAAATGGGAGGTGCTGAGATTTCTTCTTTCCAATCTTCGCTGGTATATGGAATTCTATCAATTTGATGGTTTTCGCTTTGATGGTGTGACATCAATGATTTACCATGATCATGGCCTAGGACATGGCTTTGGTGGGGACTATCCTGATTATTTTGGACTTGGGGTTGATACTGAGTCACTTATTTACCTCATGTTAGCCAATGACATGTTGCATACTCTTCACCCTAATGTCATCACTGTTGCAGAGGAAGTGTCTGGGATGCCTGGGTTGTGTCGTCCAGTTGCAGAAGGAGGAACAGGGTTTGACTATCGCCTTGGAATGGCAGCTCCTGATATGTGGATCAAGATCTTGAAGGAACTTAAAGATGAGGATTGGCGTATGTGGGATTTAGTATGGACTCTGATAAATCGTCGCCACAATGAGAAAACCATCACTTATGCCGAGTCACATGACCAAGCTCTTGTTGGAGACAAAACAATTGCATTCTGGTTGATGGACAAGGAAATGTACTGGTTCATGTCAGATACAACACCGCGCACGCCTATTATTGAGCGAGGATTGGCATTGCACAAGATGATCAGGCTGGTAACCTGTGCTCTTGGTGGAGAAGGATACCTCAATTTCATTGGCAATGAGTTTGGTCACCCTGAGTGGCTAGACTTTCCAAGAGAGGGAAATAACTGCAGTTATCATTATGCGCGTCGACAGTGGAATCTTGCCGATGACCAGCTTTTAAGATACAAGTATCTTAACGAGTTTGATCGTGCCATGATGCATCTTGAAGAGAAATATCATTGGCTGGAATCACCTCAGGCCTATGTAAGCCTTCACCACGAGGACGATAAATTGATTGTGTTTGAGAGAGGAACGCTATTGTGGGTGTTCAACTTTCACACTACCAAGAGTTTCGCGGATTACAGAATCGGCGCCGGTACTGCGGGGAAATACAGAATAGCACTGGACTCAGATGCGGCTTCGTTTGGTGGACACGGACGGCTGGATGTTAACTGTGAATATTTAGTAGACAGTCAACCATGGCACGACAGACCCTTCTCATTATTGGTATACATTCCCTGTCGCAGTGCTTTGGTTCTAGCTCCAGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D6Y9	1,4-alpha-glucan-branching enzyme OS=Mus musculus OX=10090 GN=Gbe1 PE=1 SV=1
Q04446	1,4-alpha-glucan-branching enzyme OS=Homo sapiens OX=9606 GN=GBE1 PE=1 SV=3
Q6T308	1,4-alpha-glucan-branching enzyme OS=Felis catus OX=9685 GN=GBE1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003460 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02806 all species →	Alpha-amylase_C	Alpha amylase, C-terminal all-beta domain	Domain	Interproscan
PF00128 all species →	Alpha-amylase	Alpha amylase, catalytic domain	Domain	Interproscan
PF02922 all species →	CBM_48	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037439 all species →	Family	1,4-alpha-glucan-branching enzyme	Interproscan
IPR006047 all species →	Domain	Glycosyl hydrolase, family 13, catalytic domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR006048 all species →	Domain	Alpha-amylase/branching enzyme, C-terminal all beta	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR004193 all species →	Domain	Glycoside hydrolase, family 13, N-terminal	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43651 all species →	1,4-ALPHA-GLUCAN-BRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003844 all species →	Molecular Function	1,4-alpha-glucan branching enzyme activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005978 all species →	Biological Process	glycogen biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0043169 all species →	Molecular Function	cation binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00700	GBE1, glgB; 1,4-alpha-glucan branching enzyme	EC:2.4.1.18	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074617868.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

75TPM > 0

2Conditions

166.2Max TPM

72.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	41	61.33	166.16
all_coral_tissue · baseline	38	34	85.89	143.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	166.16
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	132.71
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	119.63
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	109.00
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	105.60
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	103.32
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	103.13
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	102.78
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	96.84
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	91.00
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	90.82
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	89.28
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	85.76
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	85.45
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	82.08
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	80.04
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	79.53
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.82
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.12
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	72.49
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	71.75
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	69.37
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	68.32
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.97
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	62.51
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.74
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.36
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	47.45
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.35
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.84
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.63
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	36.84
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.29
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	31.12
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.07
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.49
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.10
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.13
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.92
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.13
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.30
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	143.34
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	143.13
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	142.86
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	134.10
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	129.17
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	125.75
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	123.31
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	121.95
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	116.62
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	113.77
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	112.35
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	112.07
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	112.02
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	111.36
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	111.16
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	110.16
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	106.81
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	104.25
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	103.31
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	102.02
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	100.07
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	98.12
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	91.56
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.91
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.39
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.16
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	65.16
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	59.24
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	44.35
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.78
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.60
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.28
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.91
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	29.81
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.