Detailed information of XP_074617954.1 in Acropora palmata

Genomic Location: NC_133884.1:2951348...2990942
NR annotation: XP_044175282.1, LOW QUALITY PROTEIN: piezo-type mechanosensitive ion channel component 2-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q92508Piezo-type mechanosensitive ion channel component 1 OS=Homo sapiens OX=9606 GN=PIEZO1 PE=1 SV=4
Q0KL00Piezo-type mechanosensitive ion channel component 1 OS=Rattus norvegicus OX=10116 GN=Piezo1 PE=1 SV=3
E2JF22Piezo-type mechanosensitive ion channel component 1 OS=Mus musculus OX=10090 GN=Piezo1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002090 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15917
all species →
PIEZOPiezoFamilyInterproscan
PF12166
all species →
Piezo_RRas_bdgPiezo non-specific cation channel, R-Ras-binding domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027272
all species →
FamilyPiezo familyInterproscan
IPR031805
all species →
DomainPiezo domainInterproscan
IPR031334
all species →
DomainPiezo non-specific cation channel, R-Ras-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47049
all species →
PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008381
all species →
Molecular Functionmechanosensitive monoatomic ion channel activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22128PIEZO1_2, FAM38; piezo-type mechanosensitive ion channel component 1/2-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074617954.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
78TPM > 0
2Conditions
51.6Max TPM
23.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 44 21.40 51.58
all_coral_tissue · baseline 38 34 25.02 44.60

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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