Gene detail

Detailed information of XP_074618228.1 in Acropora palmata

Genomic Location: NC_133884.1:474191...488025
NR annotation: XP_029213663.2, paraplegin-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074618228.1

ATGAATCGTCTCTTATCCGGATCGTTTTTCTATTGGAAACATTGTGGATTTGTTTCTTCCCGAGTACCATCAAAATTGTTGCATAACTCCAGAACTTCAAGATGTTGTGGGTATCGCAACTTGCTATTGAGTTACAGCAAGAAAGAAAACTTATCGTCTTCAGCGAAAGTAGGACAAAAGTCCCTCAAATGGGATTTGCGTAGAAACATTACTGATGTTTCAGCTATGAATGTCCACTTCCCTTCCTTGTATCAAGTGTTTCTGTGTTTAAAAAAGAAGGACATTAGGCTTGGTGTTGTCAGATTTTTTTTGGCAAGCCAACAAAGAAAACAGGGCAAAGGTGATCAGGAGGAGAAGGGTGGTACCTCAGGTCCTTTTGATTCTGACCCAGGAAATCAGCAGGGTGGATGGGTGTCCATTCTTCCTTGGGTGATGTTGGCAGTTTTTTACTTCCTGACAGCAGGTTCAGACCCCACCCCCGAAACCACATGGTCCACATTCTATAGGGAAATGCTTTCTACTGGAGAGGTAGAGCATTTAGATGTGCCATCAAGCCAGGATAAAGTGTTTGTCTTTTTGCACAAAGGAGCTGTGGTGGGAGGAAAGGAGATTATGACCCATGGCCCTCACTTTGTGTTCAGTATTGCAAGCCTGGACAGCTTTGAACAAAAGATGACAGCTGCTCAAGCAGACCTCAACCTCCCATCCAGTGACTTCATTCCAATCAGATACCGGACAAAGAATGAACTGTTATCAACAGCATTGAATGCTGCTGTGTCCATAGGCATTCTGGGAATTATCTGGTACTTCGTTTATGGCAGAACTTCAAAAACTGGAAACAAGTCCGGAGGAATCTTAGGAAGCAATCCATTTTCAAATTACATCAAAGCTAAGCCAACAGTGGTGATGCCAGGATCTGGACAAGGAATAAGCTTCAAAGATGTTGCTGGCATGGAGGAGGCAAAATTGGAAGTTATGGAATTTGTAGACTACCTCAAATCACCCATGAGGTACTCAGAACTTGGAGCAAAAATCCCTAAGGGTGCCCTCCTTGTTGGTCCTCCAGGCACAGGAAAGACACTTTTGGCCAAAGCTGTTGCAACAGAGGCAGATGTTCCCTTTCTAACAATGGCTGGCTCAGATTTTGTGGAAGTGTTTTCAGGTGTCGGTTCAGCTAGAGTCAGAGACCTTTTCAATAGAGCCAGAAAGCTCGCTCCATGTATATTGTACATTGATGAGGTAGATGCCATTGGGAGATCGAGAAAAGGAAATTCTCTGGGTGGAAACAACGAACAAGAAAACACCTTAAATCAGTTGCTTGTGGAAATGGATGGTATCAATACAATGGAAGGAGTCGTTATGCTGGCTTCAACCAATAGACAAGATATTCTGGACCAGGCTTTATTGAGGCCAGGAAGATTTGATCGACACATTGCCATTGATCTGCCCACCCTAATAGAGAGACGCGCGATATTTGAAGTTCATCTTAAGAAGCTCACACTCAAGATGCCTGTTGATCAATATTCTAAACGGCTGGCAGAACTTACCCCCGGCAACAGCGGTGCCGATATCGCAAATATTTGCAATGAGGCCGCACTACACGCTGCTCGCTTGAACGCAAAAAGTGTGGATCAAAAAAACTTTGAGTATGCAGTTGAGCGAGTCATAGCTGGTATGGAAAAGAAGAGTCACTCAATGTCACCAGAAGAACGGAAAACAGTGGCCATACACGAGGCTGGGCATGCTGTGGTTGGATGGATGTTGGAACACACAGATCCTTTGCTCAAGGTATCTATTGTTCCTCGTACCAATGCTAACCTGGGCTATGCACAGTATCTTCCTTCAGACAACAAGCTTTACAGTACTGAGCAGTTGTTTGATCGTATGTGTTTGGCCCTGGGAGGACGAGCTGCAGAAGCAAAGATATTCAAGAGAATAACAACTGGAGCTGAGGATGATCTCCGGAAAGTAACCGACATGGCGTACAAACAGGTTGTGACGTTTGGCATGAGCCCGCGAGTCGGCAACATCTCGTTTCCTGTTCTCAAACCAACTGAGCCTGCTAGGAAATTTTACAGCGATAAGCTCGCCAAGCTTGTGGATGAGGAAGTCCGCATATTAGTTGGAAAGGCACTCAAGAAGACTGACTCCATTCTTGAAGAAAATTTGGACAAACTAAGAACACTTTCTCAAGAACTTTTAACCAAAGAAGTCCTTAATTATGATGATATTGCTGCAATTCTGGGCCCATGCCCCTATGGTGACAAGAGAACTCCTGTTCCCTCCCAGGCCTTCACCCTGGAGTCAACCTTGTAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q9UQ90	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Homo sapiens OX=9606 GN=SPG7 PE=1 SV=2
Q7TT47	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Rattus norvegicus OX=10116 GN=Spg7 PE=2 SV=2
Q3ULF4	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Mus musculus OX=10090 GN=Spg7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01434	Peptidase_M41	Peptidase family M41	Domain	Interproscan
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF06480	FtsH_ext	FtsH Extracellular	Family	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000642	Domain	Peptidase M41	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005936	Family	ATP-dependent zinc metalloprotease, FtsH	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR011546	Domain	Peptidase M41, FtsH extracellular	Interproscan
IPR050928	Family	ATP-dependent Zinc Metalloprotease	Interproscan
IPR037219	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43655	ATP-DEPENDENT PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005745	Cellular Component	m-AAA complex	Interproscan
GO:0034982	Biological Process	mitochondrial protein processing	Interproscan