Gene detail

Detailed information of XP_074619014.1 in Acropora palmata

Genomic Location: NC_133884.1:2274935...2277835
NR annotation: XP_015754786.1, PREDICTED: glutamate receptor 2-like [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074619014.1

ATGGCAAAACACATTCTCTTGCTTTGGTGCGCTCTCCTTCTTTGTTGCCCATTGCGATGCCTTGGAGTTAATTACATAAAGATTGGTGGAGTCTTCCCTGATGAACATTATTCCAAAGAGTTTTCTTTAGCATTCAATCTTGGCATTGATTATGTTAATAATCAAACGGAGTTATTACCAGACACAATTCTTATTCCAGTTGTAAATCAAGCGGGCTGGAGGGACGCATTCGCAAATATCGAAGCAGTTTACGAACAGATTTATAATGGCGCTTCAGCCATCATTGGACCAATGACTTCATTTACTGTAAAGGCAACTCAACCGCTATGCACAGGATTTCATATCCCACAGCTTTCTCCTTATGCCACCGATCCATCTTTTGATTTTTCTCCTGAGTCTTACAATTACCTAGTGCGCATGAGCCCTAGTGACGCGATAGAAAACCGCGCCCAGGCAGATTTCATATCATATTTTAACTGGACTCGCTTCGCAGTCTTAACACCCAGGAATGATTACGGATTGAATGGTTTAGCGGTGTTTAAGGATATCGCCTCTCACAAGGGATGGAGTCTAGTTGCAGTAGAAAGTTATCAAGCATTTAATAACATTTCATTGGTTAATGCCACAAAGCAGTTGCTTCATATTCGAAGTCGCGGGGCCAGAATTGTAGTCTTGAATGCTGTCGCTAGCCACGTTCGTGTGATTTTGCGACAAGCAAGTGACCTAGGCATGATCGATGGATGGGTTTGGTTCGTCAGCAATGGAGCATTTTCATTTGATGGCCTCTATGACAATGGACAGGCGATACCAGGTTACCTTCAGGGAATTGTCGGTGTAAGGCATTCTTTTGGCCGAGGAACGGAATACGAGTCGTTTGTAAACATGTGGGAAGCGAGTGGTCACCAAAAAGCAACCCTCGGCAAAGTTGCTGCAGTGGGACACACCTTTGATGCAGTTTTGGTGACAGCTCGAGCTATTCACAGTATGTTATTGGATGGGAAGAACATAACAGCTTCTGAAGGTTTAACACTCAGTGCTCATCGAGGGAACACAGCTAACTCAGTCAACCTCATTGGAGAGATGTTGTTGGACTACATATCAAAGGTCAAAACATCTGGAGTCATGGATCATTTAGCCTTCGATGCAAATCGTCATCCTGTCAGAGCGAACTTTGACATAGTCAATCTGCGTTCCTATGGATTTAATAAAGTCGGAACATGGAATGTGATGAATGGGTTAGTTATGGAGAACGAAACGGAAGTATTGTGGTCGTCTGGTAAAACCGACGTTCCTAGCGATACAGCAAATTCGCTGGTAAACCAGTCTCTTGTGATTGTTACCATTGAGGAGGTACCATTTGTGTCAAAGTTAAACCATCCTAGTGATGAAGGAAAGTACATACTATCGGGTTACTGCATCGACTTACTAAAAACATTACAGGAAAAATTACGATTTTCCTATGAAATTTATCTTGTACCAGATGGAAATTACGGGGCGCAAGATCCAATCTCCAAAGAATGGAATGGAATGGTAAGAGAAATCCTCCAAGGAAAAGCACATTTAGCCATGGCCTCATTTACAATCAGTTCAGAAAGACAGAAGGTCATCGACTTCACCCAACCATACATGGATCTTGGATTAACAGTTCTTGTTAAAGCGATAAACGATGAAGAAGATGTGTTTCGGTTCTTGCACCCATTCAAAACTGAATTGTGGCTGATGATTGGAATATCTTCAATTCTCGTTGGAGTTTTTTTGTGGTTCTTTAGTACCTTCAGTCCTTTCGGGTTTTATGGCAGGTGTGTGCAAATAGCTCATCACAAGGTCCCAGAAGAGCATCTCAAACGCAGGAACACACTTCGCTTGTCAAACGCCATTTGGTCTACCATAGCTTATCTTGGGCAAAGTGCGGGCAGTCTACACCCGGTTTCTAGTTCTGGCAGAATCACTGTTACTGTCTGGTGGTTGGCAATCCTAATTTTCATTTCAAGTTACACTGCAAATCTGGCAGCTGTTCTCACTATGAAGAGGTTCTCTTCACCAATAAGAAGCATTGAAGATTTGGCAAGCCAAAATGCGATCCCTTATGGAACAGTGGAAAATAGCCAACCGCAGTCATTCTTCGAGTCTTCGATTGTACCAAGTTTCGTTACAATGTGGCAATACATGAAGTATCACCACACTCTTGTGAAGAGTAGTCAAGAAGGAATTGAGAGAGTTAAGAACGAGAATTACGCATTCGTGTGGGATTCAATCACGTTAGAACACACAACGCATACAGTTGAATGCGGAACACTGATAACAACAGGAAACCTATTTGGCAAAATCGGCTACGGCCTCGGTTTACCAAAAGATTCGCGTTACACCGAACAGTTCAATCAAGCTGTTTTAAACTTAAGACAAACCGGCTTTATGGACATTTTGGAGCAAAGGTGGCTGCGTTCTCGCAGCGAGTGCAATGAAAAAGGACACATTGCCCGTGATAGTGACTCGCAGCTAAGCTTAGCAGATATGGCCGGCGTGTTCGTGATTGTTTGCGCTGGCGTTGGAATCGGTTTTCTTGTCTTAATTATTGAATGGCTCGTTGCATCGTATGCGGTGACAAAAGAGAACGATCCAGACGCACCTAAAACTCTCTGGGAATCAATTCAAACTAGATTTAGAAACACACTACACGAATGGAGACATCGAGACGATGTACCTAGGATTAAACGTTTCCTTAATTTCCCGACCTTTGATCTAATCAATCGCTTATCGATGCTTCACTTTCCAGGAGTTATAGCCACGATGCAAAAACATCGAGTATCATCAGAGATAGAGAAAGACACAAAATCTAATGCAGCTGTTTATGAAAAAGAAGAAGTAATTGATTTTCGACCTCAAAGGACATCTCAGAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23819	Glutamate receptor 2 OS=Mus musculus OX=10090 GN=Gria2 PE=1 SV=3
P19491	Glutamate receptor 2 OS=Rattus norvegicus OX=10116 GN=Gria2 PE=1 SV=2
P42262	Glutamate receptor 2 OS=Homo sapiens OX=9606 GN=GRIA2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001009 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008066 all species →	Molecular Function	glutamate receptor activity	Interproscan
GO:0035249 all species →	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0050804 all species →	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839 all species →	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074619014.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074619014.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

7TPM > 0

2Conditions

0.1Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	4	0.01	0.10
all_coral_tissue · baseline	38	3	0.01	0.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.10
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.08
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.06
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.05
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.12
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.11
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.08
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.