Detailed information of XP_074619097.1 in Acropora palmata

Genomic Location: NC_133884.1:3318617...3362884
NR annotation: XP_044175216.1, uncharacterized protein LOC114962082 isoform X2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8TEP8Centrosomal protein of 192 kDa OS=Homo sapiens OX=9606 GN=CEP192 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002742 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14646
all species →
MYCBPAPMYCBP-associated protein familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR032707
all species →
FamilyMYCBP-associated proteinInterproscan
IPR039103
all species →
FamilyCentrosomal protein Spd-2/CEP192Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16029
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000242
all species →
Cellular Componentpericentriolar materialInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005814
all species →
Cellular ComponentcentrioleInterproscan
GO:0007099
all species →
Biological Processcentriole replicationInterproscan
GO:0019901
all species →
Molecular Functionprotein kinase bindingInterproscan
GO:0051298
all species →
Biological Processcentrosome duplicationInterproscan
GO:0071539
all species →
Biological Processprotein localization to centrosomeInterproscan
GO:0090222
all species →
Biological Processcentrosome-templated microtubule nucleationInterproscan
GO:0090307
all species →
Biological Processmitotic spindle assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16725CEP192; centrosomal protein CEP192-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074619097.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
62TPM > 0
2Conditions
12.1Max TPM
5.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 33 4.46 11.95
all_coral_tissue · baseline 38 29 5.95 12.13

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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