Gene detail

Detailed information of XP_074619136.1 in Acropora palmata

Genomic Location: NC_133884.1:5041327...5051076
NR annotation: XP_015771564.1, PREDICTED: uncharacterized protein LOC107349886 isoform X4 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074619136.1

ATGGCTTGCAGTAAGAACTTTTTCGACGATGTTAAGAAAGAACTTGAATGTTCAGTGTGCCAGGAACAGTTCAGTGATCTGAGGGAGCCGAAAATATTGAAATGCCTTCATACGTTCTGTAAGAGCTGTCTGACAGCATGGCTTCCGCGACAACAGCGCGAAGGCGAATTGAGTTGCCCAACGTGTCGACGGATTACGGAATGTTCTGCCAACGATATAAACAAGCTTCCATCTAACTTGTTTTGCAAGCAGTTGGTGGAAATAGTGGAGGCTTATAGCGGACAAGTGGGACATGAAGATTCTCCTCATTGCGGAGTCTGCGACGAAAAGAAGGCATTGAAATTTTATTGTATCGATTGCAATTCTTTCTTGTGTAGCGACTGCGCTGGCCTTCATGGCAAGGCAAAGGCTTTTAAAGGCCACGATATTAAAGAGATCTCAAACTTTAACTCACATGACGTCCAAAAGTACGTTAGGCGAGCCAACGTTTGTAAGAAGCACGAAGATGAAGTGAGGTACTATTGCGAGAAATGTAACATTTGCATCTGTCGTGACTGTGCCTTGTTGGAGCATTGTGAACACAAGAGATTCTCCATAGATCATGGACTCGATCTTAAAAAATCTGTCTTTACGAAAAGGATCGAAGAAGTTGAAGATGTTGGTCGTCGCTTGCAGGAACAAAAAGCCATTTTGGAAAAACAGAGAACAAGGTTTGATACCAGCGTCGATCAATCGAAATTAGAAATTCATCGCGTCGCTGAGAACTGGATGAATGTAATTCGCAGACATGAAGAAGCCATGACGAAGGAATTACTAAAGCGAAAGGAAACCTTCGAAAGTGAATTCTCGGCCAAAATGACCGAAGTGAGTGAAAAACTGACTAATATAAGAAACAGTTTGGAGTTTGGTAGGGACATTTTAGAACGTAACAACCTGCCAGAGATTTTGAACGTTGAAGAAACCCTTGGCCGAAGGTTTGAAGATTTTTTGTCACCTACCGAATTCAGTGGCCCGGTAGAATTAAATACTCTCACAGTCAAATACGTTGTAAATGATACGTTCTTTCCCGAAAGCGACTTAGGAAAGTTGGTTGACCCTTTAATGTCCATTGTGCGAGGCAAAGCAGCAAGAGAGGTCCACCTGGGAGAAGATTTCTCTTTCACAGAAAATTGGCGAGGTGAAACAACTTCTGATGAAGCCGACCAAGTTGATGTTGACATCACATCACTGATGCGGACCGAAGAAGCCACGAAATCTAGGCAATCAGACCTGAAAGACGGTTGGAATATATATGACGAGCAAGTTGTTACGTCAGTTCTTCAGCACAAGCATAAAGTTGACGGCGTGGAATTAACTGTGAAACCTTATTCAGATGAGGATATTAAGGCAGAGGTCTTCGAAATAGTATGTGCTGGACTTTGTCTGGACTATGTACAGTCTGTATCTCGTGAAGAAATCAAGGGTCTCCTGGTGGAAATCGAATCTAAAATTGATTTACGTTGGATTGAATCAGCTGAGAGCTTCGTGATATCAGGAACTCTCAGACAAGTGGAAGAGGCGCAGCAGGTCTTGACAAAAGGAGTGTATTTAGTCAATGGAAACGAGATGGTCAGTGATCATGAAATCAAAAATGAAGAAGCACCTCTGCCGCAAGAAGCAGGCCTTCCTCAAGCTAGTGAAGAGCGACGTGAAGTCGTGCAGAGGGATGTTAACCAAGAGTCAGCTGAGCCACTGTTAGCACTAGAAAACCAAGAAAGTCCTTGGCCAGAGAGAGCTAAAGATTCTCACAACGATCAAGGGCCTCCCTCTGAATCCCGTGATTTTGAAGTTCTGGCTTTTGAAGTCCATCCTAAGATTTTAAAAGTCCTTGCAGGAGCTCACAAGAAAGAACTGGACGACATCGAGGCACAATGTTTGGTAACAGTACCCAGAGAGGTTGAAGGAAACCAGATTTCTCTGAAACCTTCTGATGGATGTTGTGCTGAGGATTACGAGAAGGCTTGTGTTGCCTTTATTAATTTGTACCAGAAAACGTCCGACATTTTTAAAGCGGAAATATTTTCCCTAAGCAGCGGTACAAGAAAGCCTGATGGTCGTGATGCAATTAGCAGAATGTTAAAAGAGTTCCCCGAAGTACTGATAGAGAGAAGCAGGGACCAAAAACACTGGGAGATGTATGGTGAGGCACGTCATCTGCAGAAGGCCTTACATTACCTCAAGAGAATGGGCGTAGAAATTGAGATGGAATCGAAACCCTATAAGGATGTAAGTGTACAGGCGGGAAGAGCCAAATCTAAGGGTGCTGAAAGATCTTTGAATGGAGATCAATCTGAAAATCCCAGGGGTTCCAGAACATCCAGTGATGAGTTGGTATTTTACCACGGAAGAGTAAAGTTGTCTGTTTACAAGGGAGATATGACCAGTGAAAATGCCGATGTTATAGTCAGCCCTTCAGATAATCATCTTAGTCACTCTGGAGGTGTGGCCAAAGCTATTTTTTACAAGGGAGGGAAAGAAGTCGAGGACGCCTCTCGGGATGTGATATGGAAAAAGCACGGTGGATTTCTAAAAGATGGTGAAGCAATATGGACAAAACCTGGAAATCTTTCTTGCAAATATGTGGTTCATGTTGCTACTCCAATTTGGAATACTCTGGGACCGAAGAAGAGTCGAGAGATTCTCCATCGAGCTTGCCTCAACAGTCTCCTTGAAGCTGAAAAGCGTAAAGCGACGTCCATAGCACTGCCAGCCATCGGTTCCGGCTCTCTCGGAATGCCAAAAGACGTCTGTGCGGAGGTCATGTGTGACACTGTTCGCGAGTTCGTTGAACAACGAATCACCCCGAAGAAAACAATTGCTGACATCAGATTTGTGAACAATGATGACCATTCAGTGCAGGTGTTTAGCAAGAAATTGAAAATACTATTTGGATATTACTCATTGGGGAATTTCTCGAGGGGAGGTTCAACTGCCTCTGCCCCATCTCGTTCTGTAGGAGACGGTTTCGAAGGAGATCTTGCGAGCTCCAATCAAAAGACAAACCAACCTGGCTATAGCAAAGCAAGTTCACACACAATTAGTAACGACGCCAGTCGACCGGTTACTCAGCATCCCCTCAGTCCTGGTTTATCAGGTGATGTCAATGATCAGTCTTTCAGTGCCTCCGGCCGTTCCTTGTCTCATGGGATTTCATACAGTAACGCCTTGAAGAAACGTACGCCTGGCAACGATTCCAGCCTACAAAAAGCACAGGAACCTGGAGCCCCTGATAAGAGGAGAGACAGCAAAGACGAAGAATGCCCTATTTGTCTCAATTCCTTTTTAAATCCTCGTTCATTGAAGTGTAAGCACAAGTTCTGTTCGTCTTGTCTCCAACAAGCCTTGGATGTCAGCAACAAATGTCCAGTGTGCCAGGAACCTCAGGGTGTTTTAAAGGGAAACCAGCCTCCGGGAGAGATGAGATGTCGAGCTGCGTCTTACAGTGTTCCTGGCTACGAAGGATATGGTACCGTCATAATAGATTATAGTTTTCTGCCTGGTATTCAAGGCGTAGAGCATCCCAACCCTGGAAAGCGCTATGAAGGCACGCACCGTCAGGCTTATCTTCCGAATACACCCGAAGGACGTGAGGTATTAGAGCTCCTGAGAAGAGCCTTCGATGCTCGCTTGGTCTTTACTGTTGGCACTTCAACAACTACAGGGCTTCAAAATCAAACAACGTGGAACGATATTCATCACAAGACTAGCAGATACGGAGGTCCCTTTCAGTTTGGATACCCCGATCCTGACTATCTGCGGAGAGTCAAAGAGGAGTTGGCGGCAAAAGGAATTAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80V91	Probable E3 ubiquitin-protein ligase DTX3 OS=Mus musculus OX=10090 GN=Dtx3 PE=1 SV=2
Q8N9I9	Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens OX=9606 GN=DTX3 PE=1 SV=2
Q5REG4	Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii OX=9601 GN=DTX3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000854 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039398 all species →	Family	Deltex family	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622 all species →	DELTEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06058	DTX; deltex	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074619136.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

56TPM > 0

2Conditions

26.0Max TPM

5.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	29	4.24	19.24
all_coral_tissue · baseline	38	27	7.19	25.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.24
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.92
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.45
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.73
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.44
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.86
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.12
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.54
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.20
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.09
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.02
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.01
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.84
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.71
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.66
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.39
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.24
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.64
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.39
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.30
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.16
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.02
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.30
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.19
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.85
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.69
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.37
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.32
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.15
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.96
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.28
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.62
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.52
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.64
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.42
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.16
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.28
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.25
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.86
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.07
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.49
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.97
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.95
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.67
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.28
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.25
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.99
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.23
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.65
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.24
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.16
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.85
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.44
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.38
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.49
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.28
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.