Detailed information of XP_074619366.1 in Acropora palmata

Genomic Location: NC_133885.1:22018800...22038407
NR annotation: XP_029210701.2, LOW QUALITY PROTEIN: tudor domain-containing protein 3-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZMS6Tudor domain-containing protein 3 OS=Gallus gallus OX=9031 GN=TDRD3 PE=2 SV=1
Q91W18Tudor domain-containing protein 3 OS=Mus musculus OX=10090 GN=Tdrd3 PE=1 SV=4
Q6NYG6Tudor domain-containing protein 3 OS=Danio rerio OX=7955 GN=tdrd3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006000 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08585
all species →		RMI1_N_CRMI1, N-terminal OB-fold domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002999
all species →		DomainTudor domainInterproscan
IPR042470
all species →		Homologous_superfamilyRecQ mediated genome instability protein, N-terminal OB-fold domain superfamilyInterproscan
IPR013894
all species →		DomainRecQ mediated genome instability protein 1, OB-fold domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13681
all species →		SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18404TDRD3; tudor domain-containing protein 3-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074619366.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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