Gene detail

Detailed information of XP_074619373.1 in Acropora palmata

Genomic Location: NC_133885.1:6866832...6905994
NR annotation: XP_044176879.1, arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074619373.1

ATGGCTTCCGCCGACACGAAGATCGCAGCGGTCAGGGAATGGCTTGCTAATGAAGTTAAACTGGATAGGTATGCTGATAAACTGCTGTCAAATGGATTTAGTTCCCTCGAGACATGTTGTAATATTGACGAAAGCGTCCTTGATGAAATTGGAATTGTGTTGCCATATCATCGGAAACGATTCCTGCAGTTTGTGGGAAAGCTCCGGGATAAACTAAGTTCGAATAATGTCATAAACAATGAAATCCTCGGCGGTGTTAGCCCAAGCACGGAATTAATAAGCAATGACGCTGAACAGGGAAGTGAACGGAAGGAGTTGTTTATAAATCATGATAATGGGTTTGAAAGTAAAAGAAGCGATAGCGATAGTGTCATGAAAGAGAGTGTTGAAGAAACAAACTCAGTTTGCAGTGCCGATGTATTCGTTCCACTTCTTCCGCCAAAGTCACGATCCAATTCAGGAAAAACTCGTCCACCTGTACCACCAAGAAAAGACTTAAACGAAGGCACAGGCGGAGATGGAAATGTATTTCCTGGTGCTGACTCACAAAATGAAGGTCAACAGTTAGTTTCTAACGATCCTTGTCCAGCAGTTATTGATCCTACGAAGAAGACTCCAAAGAGGGCGCCTATTAAACCACCAAGGAGGACAATCTTGAGAGCGCCATCCGAGAGTGAACAAGATAAGACACCAGACACTCGTGCACAGGGTACTGCCATCACATGTTTACCTGATCGCATTGATGACCCTACCAGCGATGATATTGATCCATTCAATTACAAGGATGAGGGAAGTTTCAATATGACTGTAAATGACAGTGCAAAAACTTCAAAAGATCAGAGAGTCAAGGAAAGTTCTTCAAATGGAAATATTGGAGCTGACACAAGCTTGTACTCATGCCCCATTGAACCGAAAAGACCAGCCCCCATGGTTCCTGTTAGATCCGTCTCAAAAAAGCCCATACCAGTACCACGAACTAAAGGAAAGCTAGAAGAAGGGGCCAATCTTGCACCTGTTCCTCCCAGTAGGAGCAAGGCAAATGATGAAAATGAAGAATTTTCACCTGAGTCAAATGTTGCTTCACCACCAAGAACCAATTCATTTTCATTTCCTGAAGATGATAGAACAGCAAAGAAATCATCAACATTACCGAGATCATTTCCTCTTTCTGCAAGAACTGAACCATATCCTCTTCCATCAAGAGAGACAAGTGCAAGTTTGAAACATAGAAGGGGTTTTCCAAATATACCATTGCCTCCACTTCCATGTGATGAACACAGTGAAAAATCACGAGATAAATTGACAGAAGTCCATCAACAAGAAGAAGAATGTGAAGAGTCTATGTATGAAGCTGTTAATCAAGAAACAGAGCCGAAGATAGATGAAGCAGCTTGCTATGCAAGTGATGATTCATCAGCTGATTCATTAGATGATCTTTCAGAGGCAGACTTTTCTTCTAAGTTCAAGAGAACTGAAAGTACTGATGGTGTGGATGATCACAGAATATCAAAGCATATTCTCAGTCCAAGGGTTCGAAAGCGGGATGGATGGCTGTGGAAACAAGGAGGGCCAAAAAATAATAAGGGATGGAAGAAACGTTGGTTTGTTTTTAATGGAACGGATTTAAGATACTATAAAGAGAACAACAGTCTCAGTGACTCCCTTCATATAATCCCTGTCAGCCAGATGAAAAATATTGAACACGTGAAAGAGGCAAAACGCCCAACATTCAAAGTCATCACTCCTAACAGACTATTTCTTCTAGTGTCTTCAAGCATAACTGACATGAATCTTTGGTCACAGACTCTTATGGAGGCAATTCTTACGACCAAGAGAGAAAATGAAATCTGGAAGAAGGGTGGAGACATGGCAGATCCTGACAAGGAGGGACTGCTCAAGAAACAGGGTCACAATATGGTCGCTGATTGGAAGATGAGATATGTTGCTGTCAAAGATGACAAGATATGTTATTATGAGTCATCTGAAGATTTTATTTATGCAACACCAATCAATTGCATTAATGCTGCACTTGCAAAGGTCAAGCCAGTTGAAGGGCATAAAAACAGATTTGTTATCATTACAGTTAACAAAAATTATATGTTTCAGGCAGAGAGTGAATTTGAAGCTGCAGCCTGGATGGTTGCCATTGAAACAGCAATACAAATAGGACTTGGTGATAGATATTTTCTCGAACAAGTTCAGAAGAATCCTAGCAATCTCTTTTGCGCTGACTGTGGAATGAAAGATCCGGTTTGGGCGTCAGTGAACTTTTGTGTCTGTGTTTGTGCATTGTGTATTGGTGTCCATCGAAGTCTTGGAGTGCATTGTTCCAGGGCCCGCTCTCTTCTAATGGATGAGAAGATCTGGAATCCCACTCTTGTTGAGTTGATGATAAAAATTGGAAATGACAAGGCAAACCAACTCCTTGAGCACAAAATGCCAGAAGATGACAAGATATCTCCATCAGTCGATTCTGCAGCAAGACGTGAATTTATTTATAGCAAGTACTATGAGAAGAAATACTGCAAGTACCATCAGGCTTTTGGGAATGCTGATGTTTTAGGAAAGTTCTTGCGGGACACAGTGGTGACAGATGACGTTGTGACCACCATGGAACTGATTCTTAATAAAGTCGATGTGCAGTATGTCCCACAAGACTCTGAGGATGAAAAATCGCCTCTTGAATTAGCAGAAGAAGCTGGACAATCTCTCCAAGCTGAACTGCTCCGCCAGAATGGAGGGGAGGGTAAATTTGAGATGTTGACTCCTGTGGATACTCCAATCACATTTGAGAATAATCAAACTGTATCAGCAGTCGCGGAAGTGATTTATGAGAAAGAGGGATTCTTGTACAAGAAGGAAGCAACTTGGAGGAAGAAATGGTTCTTGTTGAAAGATCGACAACTAAAGTATGCAAGAGGGCCTCATGAAAGAGACGACCTTGCAGCAATTGATCTGACTACAGTGACGTCACTTGTCAAATGCTCCAGAGGAGAATCATTTCAAATGGACATTGTTACACCTGACAAAACACACAGCCTCAAGGCTGACACAGAGGAAGAGTTGGAAGCCTGGTACTTAGCCCTGAGAAACAAGCAGGTCTTTGGTGTTTTGCTAAGTTATCAGGACCTAGGGTCCGATGGAATCCCTCATCTTGTGGCAAAATGTCTTCATTTTGTGGAAACCTATGGTGGACTTGAATTGGAAGGTGTTTACCGAGTGAATGGATCACAGCTGTTCATGAAAACACTAAGAACAGCATTTGATCAAGATGCTGGGAGAGTTTTGCTGACTTTGGACATGTGTGGTGTTCATGATGCCACAGGAGTACTTAAACAGTACTTGCGCGAGCTGCCAGACCCAGTCATTCCCGGTCACATGTACAGAGCCTTCATCGCGGCAGGCTTGAACCAAGACCACAACACAAGACTAACTGCGCTCAAAGATATGATCAGCCAACTTCCCAAAGTGAACCATGACACTTTGAAAATAATTATCTTTCATTTGACAAAAGTTGTGGAATTATCGACTATTAACAAAATGGGAGTTCCTAATGTGGCAATGATTTTTGGACCAACGTTAATGTCCAATTCAAAAACTGGTACAATGGACGATGCTTCGATCAATCAGGAGTTTTCTATCGTTGGAGATATGATCAATTACTACCAGTGGTTATTCGATGTTGGGGAAGAGGAGTATCTCAAAGATCAGGCCATGAAGGAAGCAAAAGAGAAAATCAGAAAACTCAACGATGGAACGGAAAATGTAGGTGGAGGAGAATTTACTCTGGATATTTATGTCAGAGAGAGAAACGAGAGTCCTTGTAGAATGAAGGTTTCCTCTGAAATGACAGCAGGAAGAGTGTGCGCGGAAATTGTTTCGCAAATGGATTTGTCTCGTCACGTGGACTGGGTTCTGTTTGAAGTCGTCAGCAACGGCGCCATGGAGCGTGCTTTCCAAGTTCGAGAGAAGGTCCTGGCAGCAGCAAACTGGGGCCCCGATAACTACCTCATCGTGAAAGAGAATTACATAGCGGAACAGATCGCTCCTCACGTTGGTGGGCTTTCGATTGACGGAACCATATACATCCGGGAACCCAAAAAGAACTGGAAACAGTCTCCCGTGTGTTTGAAGAATGGTTACTTGACCGTCAGCAAGGAGAAAGGGCTGATTTCCAAGGCTACCAAAGAAGAACAATGGCCACTTCATAAACTCACGTTGTACTTGGGGATACCACCCGAGAAGGCCACCAAGGGAATTGATACCAGTTGTGGTTTCACTGTTAACATCAAAACAGACCAAGATGAGATCACGAGATATTTTTGTGTGAAAGACAGAAGAGAAAAGCACCGCTGGGTGGCAGCAATACTTAACATGAAGCACCCCGAAGGGATCTGGTGTGACCCTTCCCACAGGGAAACAGGCGCTGCGACTTCTCCCTCTGAAGCTAAGGCCCAGCCAGCCGACGATTTACCGATGTATCTCGGACGACAGTCGACAGTACTTCGACGGAAAGATTCCTCGAAAAACATAATGGAAGAGTTGAGATTCAGACGGAAGTCCCTTAAAAGGTCAGGCGTCGGAGATCATCGGAAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4LDD4	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Mus musculus OX=10090 GN=Arap1 PE=1 SV=2
Q96P48	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ARAP1 PE=1 SV=3
Q96P50	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ACAP3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR052227 all species →	Family	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45899 all species →	RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005547 all species →	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074619373.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.