Gene detail

Detailed information of XP_074619660.1 in Acropora palmata

Genomic Location: NC_133885.1:2397709...2411699
NR annotation: XP_029213367.1, integrator complex subunit 9 homolog isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074619660.1

ATGAAACTGTATTCGTTAGGTCGAAGAAGCACGGCGCCATGCATGGTTCTTCAATTCAAAGAAACGACGGTAATGTTGGATTGCGCCCTAGACATGTCAACTTTGCAGCATTTCACTCCTCTGTCTTTGGTAAACGATGAGAACACAAGCCACCTGAAACTGTGGACCACACGGGAACTACAGGATATTGAAGGATTTTCCTCCCAGAATAATTTGAAGGAAATAGCTGGCAAGGTTTTTATTGAAGCCCAACCAGAATGCTGTCCTCCAGAGGATTGTTTATTAGATTTCTCCACCATAGATATCATTCTTATATCTAACTATCATTTTATGCTTGCACTTCCATATATAACACAGCATTCAGGTTTCAAAGGAAAAATTTATGCAACAGAGCCAACAATTCAGATGGGAAGGGAGCTGATGCTAGAGATGGTGGTATATGCAGAACGTGTTCCAAGGATAAGCAAAGGAGAAATGTGGCGAGAGAGAGAGGTTCTAAGATGTCTTCCTTCCCCTCTTTGTGACTTAAAAGGTGCAAAATCATGGAGACCACTTTACAGCAAGCATGATGTTAAGGCTGCAATATCAAAGATTCAGAATGTTGGATATTCTGAAAGAATAGATTTGTATGGTATTCTCAAGCTGACTGCCCTTAGTTCTGGGTTTTGTGTGGGAAGCTGTAACTGGGTCATTGAGTCAGACTATGAAAAGGTCAGCTATGTCTCTTGTTCTTCAACATTTACCACTCACCCTCTGCCAATGGATCAATCCTTACTTAAAAGCAGTGATGCCCTGATACTTACTGGGGTCACGGAAGCACCCACTGCAAATCCTGATGCAATGTTGGGAGACTTCTGTAATAACTTAGCTACTACATTGAAAAATGGAGGGAACGTTCTTGTGCCTTGTTGGCCTTCCGGAGTACTGTATGATCTCTTCGAGTGCTTGTACTCTTATATGGACAATGCCAGCTTGACGTCAATCCCATTCTATTTTATTTCACCCGTGGCAGACAGTTCCTTAGCATATTCAAATATCTTTGCTGAATGGCTTTGTCAAAGTAAGCAGAGCAAAGTTTATCTACCAGAAGCTCCCTTCCCACATGCCGAGCTTGTGAAATCTGGCCGTCTTAAACATTTTCCAAGCATCCACGACGGATTAAACAGCTGTTTTAAGACACCGTGTGTCGTATTCGCAGGACACCCGTCTTTACGCTTTGGAGATGTGGTGCATTTTATAGAATTGTGGGGGAAGTCAAGTGGCAACACCATTATATTCACAGAGCCGGAGTTCCCTTACCTTGAAGCCCTTGCACCGTTTCAACCTCTTGCGATGAAAGCATGCTACTGTCCAATCGATCCGAGGCTGAATTTTACGCAAGCAAACAAACTCATACGAGAACTCCAGCCAGGTCATCTCGCCATTCCAGAGGCGTACACCAGAGCACCGGATCTGTTGCCACACAGAACGGACCTGATAATACAAGATACGGAATGTAAAATATCAACCTTCAGCTTTTTGGAAGCTTTGTCTCTGCCTGTTAGCCGACAGTTTGAGAAAGTGGTTTTGTCAAACGAGTTGGCCAACAACCTTCACCCACAGGAAGTAAGACCTGGCATTGCGGTGGCTACGGTAACTGGTACCTTGGTTTCGAAAGACAACAGATATACACTCGAGCCATTGGAGCTTTCGGAAATTGACGTCGAGAAGCCACAGGAATCCAATGCCGCGGCAGAGCGTCACACGGACAGGCAAAAATCATGTCATTTGTGGGGTAGTGTGATGGTAGAGGATCTCTTACAGTCACTAGCAAAGCGAGGCATCTGTGATGTGCAAGTGGAGTCCAATCAGGGAGGACACACCCTTCATCTGGCTCAAGATGATGCCATGATTCAACTTGATGCGAGTGGAACTCACATTATCACGCATGGAAACGAGGCTTTAAGGATTAACATCCGGGACTCGTTACTTGAATGTGTGACGCAGTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SBF0	Integrator complex subunit 9 homolog OS=Nematostella vectensis OX=45351 GN=ints9 PE=3 SV=1
Q9NV88	Integrator complex subunit 9 OS=Homo sapiens OX=9606 GN=INTS9 PE=1 SV=2
Q2KJA6	Integrator complex subunit 9 OS=Bos taurus OX=9913 GN=INTS9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004036 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10996 all species →	Beta-Casp	Beta-Casp domain	Domain	Interproscan
PF16661 all species →	Lactamase_B_6	Metallo-beta-lactamase superfamily domain	Domain	Interproscan
PF21382 all species →	IntS9_C	Integrator IntS9, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022712 all species →	Domain	Beta-Casp domain	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR048660 all species →	Domain	Integrator complex subunit 9-like, C-terminal domain	Interproscan
IPR027074 all species →	Family	Integrator complex subunit 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46094 all species →	INTEGRATOR COMPLEX SUBUNIT 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13146	INTS9; integrator complex subunit 9	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074619660.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

53TPM > 0

2Conditions

19.2Max TPM

5.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	27	4.73	12.70
all_coral_tissue · baseline	38	26	7.29	19.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.70
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.47
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.17
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.09
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.91
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.90
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.78
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.56
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.44
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.44
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.35
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.46
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.17
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.04
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.38
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.52
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.20
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.80
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.48
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.37
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.95
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.31
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.24
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.97
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.84
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.32
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.87
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.24
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.67
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.66
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.04
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.98
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.22
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.16
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.86
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.79
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.65
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.12
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.96
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.66
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.61
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.50
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.73
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.69
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.45
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.30
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.47
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.90
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.56
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.27
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.83
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.90
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.75
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.