Gene detail

Detailed information of XP_074619660.1 in Acropora palmata

Genomic Location: NC_133885.1:2397709...2411699
NR annotation: XP_029213367.1, integrator complex subunit 9 homolog isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074619660.1

ATGAAACTGTATTCGTTAGGTCGAAGAAGCACGGCGCCATGCATGGTTCTTCAATTCAAAGAAACGACGGTAATGTTGGATTGCGCCCTAGACATGTCAACTTTGCAGCATTTCACTCCTCTGTCTTTGGTAAACGATGAGAACACAAGCCACCTGAAACTGTGGACCACACGGGAACTACAGGATATTGAAGGATTTTCCTCCCAGAATAATTTGAAGGAAATAGCTGGCAAGGTTTTTATTGAAGCCCAACCAGAATGCTGTCCTCCAGAGGATTGTTTATTAGATTTCTCCACCATAGATATCATTCTTATATCTAACTATCATTTTATGCTTGCACTTCCATATATAACACAGCATTCAGGTTTCAAAGGAAAAATTTATGCAACAGAGCCAACAATTCAGATGGGAAGGGAGCTGATGCTAGAGATGGTGGTATATGCAGAACGTGTTCCAAGGATAAGCAAAGGAGAAATGTGGCGAGAGAGAGAGGTTCTAAGATGTCTTCCTTCCCCTCTTTGTGACTTAAAAGGTGCAAAATCATGGAGACCACTTTACAGCAAGCATGATGTTAAGGCTGCAATATCAAAGATTCAGAATGTTGGATATTCTGAAAGAATAGATTTGTATGGTATTCTCAAGCTGACTGCCCTTAGTTCTGGGTTTTGTGTGGGAAGCTGTAACTGGGTCATTGAGTCAGACTATGAAAAGGTCAGCTATGTCTCTTGTTCTTCAACATTTACCACTCACCCTCTGCCAATGGATCAATCCTTACTTAAAAGCAGTGATGCCCTGATACTTACTGGGGTCACGGAAGCACCCACTGCAAATCCTGATGCAATGTTGGGAGACTTCTGTAATAACTTAGCTACTACATTGAAAAATGGAGGGAACGTTCTTGTGCCTTGTTGGCCTTCCGGAGTACTGTATGATCTCTTCGAGTGCTTGTACTCTTATATGGACAATGCCAGCTTGACGTCAATCCCATTCTATTTTATTTCACCCGTGGCAGACAGTTCCTTAGCATATTCAAATATCTTTGCTGAATGGCTTTGTCAAAGTAAGCAGAGCAAAGTTTATCTACCAGAAGCTCCCTTCCCACATGCCGAGCTTGTGAAATCTGGCCGTCTTAAACATTTTCCAAGCATCCACGACGGATTAAACAGCTGTTTTAAGACACCGTGTGTCGTATTCGCAGGACACCCGTCTTTACGCTTTGGAGATGTGGTGCATTTTATAGAATTGTGGGGGAAGTCAAGTGGCAACACCATTATATTCACAGAGCCGGAGTTCCCTTACCTTGAAGCCCTTGCACCGTTTCAACCTCTTGCGATGAAAGCATGCTACTGTCCAATCGATCCGAGGCTGAATTTTACGCAAGCAAACAAACTCATACGAGAACTCCAGCCAGGTCATCTCGCCATTCCAGAGGCGTACACCAGAGCACCGGATCTGTTGCCACACAGAACGGACCTGATAATACAAGATACGGAATGTAAAATATCAACCTTCAGCTTTTTGGAAGCTTTGTCTCTGCCTGTTAGCCGACAGTTTGAGAAAGTGGTTTTGTCAAACGAGTTGGCCAACAACCTTCACCCACAGGAAGTAAGACCTGGCATTGCGGTGGCTACGGTAACTGGTACCTTGGTTTCGAAAGACAACAGATATACACTCGAGCCATTGGAGCTTTCGGAAATTGACGTCGAGAAGCCACAGGAATCCAATGCCGCGGCAGAGCGTCACACGGACAGGCAAAAATCATGTCATTTGTGGGGTAGTGTGATGGTAGAGGATCTCTTACAGTCACTAGCAAAGCGAGGCATCTGTGATGTGCAAGTGGAGTCCAATCAGGGAGGACACACCCTTCATCTGGCTCAAGATGATGCCATGATTCAACTTGATGCGAGTGGAACTCACATTATCACGCATGGAAACGAGGCTTTAAGGATTAACATCCGGGACTCGTTACTTGAATGTGTGACGCAGTTTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
A7SBF0	Integrator complex subunit 9 homolog OS=Nematostella vectensis OX=45351 GN=ints9 PE=3 SV=1
Q9NV88	Integrator complex subunit 9 OS=Homo sapiens OX=9606 GN=INTS9 PE=1 SV=2
Q2KJA6	Integrator complex subunit 9 OS=Bos taurus OX=9913 GN=INTS9 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10996	Beta-Casp	Beta-Casp domain	Domain	Interproscan
PF16661	Lactamase_B_6	Metallo-beta-lactamase superfamily domain	Domain	Interproscan
PF21382	IntS9_C	Integrator IntS9, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022712	Domain	Beta-Casp domain	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR001279	Domain	Metallo-beta-lactamase	Interproscan
IPR048660	Domain	Integrator complex subunit 9-like, C-terminal domain	Interproscan
IPR027074	Family	Integrator complex subunit 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46094	INTEGRATOR COMPLEX SUBUNIT 9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016180	Biological Process	snRNA processing	Interproscan
GO:0032039	Cellular Component	integrator complex	Interproscan
GO:0034472	Biological Process	snRNA 3'-end processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13146	INTS9; integrator complex subunit 9	-	Spliceosome	ko03041	deepkoala