Gene detail

Detailed information of XP_074619745.1 in Acropora palmata

Genomic Location: NC_133885.1:16020791...16045223
NR annotation: XP_044177109.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114971967 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074619745.1

ATGTCCACGCGCGCGGCTAAATTTGACGTTGAGGCAAGCAGATCGCTTGCACGAAATACGACACAGCCGCTAGGCGCACGAAGCGAAGGACGACTCGAAGTAAGAGAAGAACGAGTGTCTAACAGATCTCGCATTGGAACTATTGAAGCAGAACCAACGGAAGTGAACATTTCGCTTAAAAAAGCGTTCGGAAAGACAAACGAAAACGGCAGTCAATCAGTGAAAATCTCAAAAGGCCGAGTTCACGCTGCTTCTGCGACAGGCGGCGAGAGTTCGCAACAGACTCCGGAATATGCCCCATCGGCACCATACGGCTCATCGAAAAACACTCAAGACTACAGCTGTAAAGCCTCCTCGAATCTTTACACCAGCATGCAGAAACCAGCCTCGGAAAGAAATAAGTTTATGGATAACATTCCAGGGATACCAGCTGTAACTGAGCAGTCATCTCCGCGAGGTGACTTCATCGGTCGAACAGTATTTCCGCCCCCTTCGGTCGGCAACTACGGACAAAATGTTGCCTATCCTTCTACTCCTTCGTCCGACATTAAACCTATGTCCCTAGATTCAAATGATACCACCGATTTGATTTTCCACAAACCTTCAGCAAACAGACACACTGCAGAAGCGCGGGGTAGGATTCAAGCAGAAACAGAAATGGAGTGGAATGCGAGCCGCGAAAATAACTATCGTCTTCGCGAAGAACACAAAAACAGAAGCGTTCCCAGTGAATTCCATCACGCCCGAGCAAGAACGGGGAGGCGTTGCAAAGATGGCGTCAATGTTGTTTACAGTGAAGCAAAATTCTCGGGGTCAAATCGTGCAAATATTTCTCGCCGATCAAACCCTGCTTCATGTTACTCGGAGTCTCCAACAGACAGCCAGGGTTCCTCCACTGAATCGGAGAGCTCCTCTGACGCATCTATTAAACGCAGGCGGCGAATTCGACGGAAGCCTTCCAATAAGTCGATTGGTTCAAGCATTTATGGTGAAGACAACACTAGTGAGTCCGAAAATCAAAGCGTAAGTGAGTTGTCTGCATCTGACAATGTGCGCTCTCGAAGCAAGCGAAGGACGCAAAGTTCTCGCGAGGAGGATGATTTCGGGTCTGTTGTTGATCTCAAGGAGCATCGGAGTGGTACCTTTAATAGGCTTAGGTCGAGTAGTTTGACTTCTGTGAGTTCTTTTGAAAGCGCAGGGATATCCGGCGATTTTTCATCTAGAAATCAATCGCCCCTGTTATCCCCGAGGGGTTCCAGTATATCCAAGGTGAAAAAGATCCAAATTCGCTCGCTTACTTCATTTGCTGATAGTCAGATTTACAATAAAGAAAATCTTCCTCAGAGGAGAAGATCAACAGAGGAAAGAGAGACGTTCAGAATGAGACCGAGAATTGAAACAGCTCCAAAGGAAAAAAGATCCAGGTCCCTTGTGTCAAGACAAGGATCAGAGTCACCCTCTCTATCCAGGAATCCATTTGGGCTTAAATCAAAGAACTTTGTACAGAAAGCAAGCAAGGAATTGCTTTCTAGTGACAGTGAATGTAATCTTGCTTCTGACAAGGAACACATGAGTACGCAGAGCACCAGTAAAATGTTTGATGAACAAGTTGGTCAAGAACAACTCAAACGGGAGAGCAACTCTGATGTTGCTATCCAAACTGAAACCAGTGATTCTAGATGGAACTTTAACATTGCTAATGAACATCAGGCCAGTGCTTTTTTGCCAATACAAGCTAACGATAGAACTGGTTTGAATGTAACAGACCAGGATACATTCATTTCAGACTCCAGTGCTGAGAAATTGGCTACATCATCAGGAAATGTTTTGGTAAGACCTGTGGCAAGAAGAGACAACAGTCGTCCCTTGTCTATTGTCCAGGAAACCGAAGAATCTGCTGATGTCTTACAGAAAGATGAAACAGATCATACATTAGAGGAATCAAAATCTTCTGGTTTTTCGCCTCTGTATTCTGAGGACTCTTCATCCAGGACATACATGATGGAAGTTTGCAATGAGACAAGGCAAGCACTCAAGGAATTTGATCCAAAAGCAACAGGAACATCTCCAGTAAATGAAGTTGACTTGATTAGCTTTGAGGATGGGAAAGGTGGAGGAAAAGAACCTGTCAAAAAGAGGACAAAAAGAATGACCCGACCCAGAATACCAACAATTTTGGGTAGTGAGGAGGACAGTGGGAGAAAAAGCATTGATGCAGATCTCCAAACCTTAGAAGCAAAACGGAATTTGGATGATGAAAATGAAGTCACTTTAAAAAAAGGAATGTTTGATGGCTCAAAGAGGGATGCCATTATTGAACATGACAGTGAAGCAGAAAGCACACCACAACCAGCTTCAGAAGTTGAGGACAATCAGGTTGTGGATGTACTACATCATGACATCAACAACCTTAATAAGGTTCCAGATGATTCTGTGCATAGTAGTAAAAACAAAGACACCATTGATGATATGAAACAAAAAATTCCACCCAAAAGAAAGCTGATGAAAAGGGCTTCCTTACCAGTGATCAGAACTGAATTATATAAAGACGAAGCTATGATAGTCGAAGACCCACCACGATTAGAAACAGTCAAGATAACTGATTCACCATCATTACGGAAGGCAGAAACCATTGGTGACCTAAGTTTAGACAATCATTCTGGCCATCTTGAAGCTTTTTCATGTAGTGACATTGACAGCAAGGAATTGTTGTTCCCAGAGGGTAAAAACTTGGATGAGTGCAGCTCTTCCCTGGGACAAGTTCCGTCCCCGAGTCCAAGCCAAATAAGTTTTGATGCCCTGTCATTGACGACAAGTGGTTTTAGTGAAGCAGACTCCAACCAGGTTAGCACAGGGGACCTCGATGTTGGATATGATATTTTAAACATGGATCCAACAGCCAATGGGAAATCTGTAGACTATGCATGGAGGTCGCAAAGTGATCCTAGCCATGGGATACAGCTTGAAAACACTGTAGCAGAGCTTCAGGCTCACCGTAACAGTAACAGCGAACCTAATCTTAGTGGGGAAAAACTCAAGGAAGAGTCAGAGCAGCTGGCAAAGAGGATAAATGGTGGAAATCAAGGAGAGATAACTAGAAAGACTTGTGGCCCTGACAACAACAATGATGATGATGACGATAAGGAAAGTGAATTAAGTCCAGATGATGGATGCTATGAACTTGACAGACCTGAGCGTCACATCAAATCAGTGAAAAGGGCTAACTCGGCACCAGAGCCGGTAACTTCATCATCACCAAGAGCACAACGAATAGCCAATTCCATTGCTGTAGAAAAGGCTCAAGTTAAGCTCAACAAACTTGCAGCAATGGAGACAATTATTGAGGTGCCAAATGCAGAACCCTCTGTTCAAATGACAGAAAAAGTCAAACTTGAGCAAATAAGAAGCTCGCCATTAGAAGGGAGTTGCACTTCCCCTATGTCAGGTGGAATGGCAAAAGAGGAGAAGAGGAAATCGTCACAACCAAAAGAACAAGGAAAACCACAGAAATCCAAGCATGATCTGAGAGCTCACGTGGTGAAGAATTTGCTGGATACTGAAGCATCGTACGTGCTGAATTTACAGTTCCTTGTCTCGAGCTATTACAAGGCCCTGAAGAAGCAAGAAAATTCTGGGATTGTGGAGCCAGCACAAGTGGATGAAATGTTTTACCAAATTCCAGAAATCCTCCTTTGCCATGAGTTCTTTCTCAAACAGCTGCAGGCTAGGATGAATGAATGGCATGACAAGCAAAAGATCGGCGACATCTTTGTTTCTTCGTTTACCAAATGTTTCCTGGTGGATGCATACAGTGCCTTTATCAATCACTTCCTGCAAGCTAGAGCAGCAGTCAGAGTAGCTACAGAGTCCAGACCAGCTTTTGTGCGATACATGGAGCAATGTTCCAGAGATCACAAAGAAAAGTTGACACTACAAGACTTGATGATCATGCCAGTTCAAAGAATTCCGCGATATGAACTGATACTAAAGGACATGATAAAACACACCCCCCATGACCACCCTGATCATGGAAGCCTTCAACTTGCTTTGGGAGAGATCAAGACGCTGGCAGACAGAATGAACAGAGGGGAGAAGGAGGTTGATCAAGCCGAGAGAGAAGCAGAGAGGCTTCGGGATCTTGAGGCAACAATAGAGGGCATGACCGAGCTGGTGTCTCCAACTCGCAGACTGATCCGGCAAGATTTAGTGGCTGAGGTGAAAGGAACAATAACCAAGAAAGACCGTTGCCTGTTCCTGTTTAATGACATGCTGGCTTGTGCAACTGTCAAGAGACGAGCTAATGCTTTAAGAAGAGGCTCCTTAAGCATATTCTCTGGGTCAGGAACAGAGTTTAATAAATATAAACTGCTTTGGAGACTGCACCTTGACTACGTTGAAATTTACAAATCTTCTCCTGAAGCTCAGAGACGGAACAGTCTGGAAAAACAGCTGGAGAAGCTGGACGTGGACATGTCATCATTGAGCAAGATCAGTGCCCTGGCAGACACTTTGACAATAGCACATATTGCATTAGATGCAGCTATACGAGAACTGATGAATGACGTAAACCGACAGATCTCTGAAAAGCAAATCCCACTGCAGCCAAATACATCAACAAAATTAGAACTTCATGCACAGACTGAGGAAGGAGAAGAGCTCTTTCAGTTCCTTTTTCTGGAGACAGAAATCAAGAATTCCTGGGAGGCATATTTTGAAGATGCAAAACAAAAGCTTGCTTATGCCAAAGATACATTTCCTCCTGAATTTCAATACTGTATTCCCATAAACAAGACAAGGAGTGGAATGCAGTTTACTTGTGCTTCCCCTTGCCAAGTTCCACATGTGCTAGATAGAGGAAATCACTGTGGGTCGGGAGATGTGTGGGTCTGCAACAGTGATGGTTATGTTGGACAAGTCTGTATCCTCAGAATGGGAACACAGATTCAGCCATGTGGTTCCATCACGGTTTGCATGTCAAGAATTCTATGCATTGCTCCTGTTCCTGGAACAAAATTCGTAGGGTTGGAAACCCTTCAGTCTGAAAGCGAAACGAAATCCGATACTCAGTCAATATCTGTTACCAGCGAAAAGAGCGCAAAAACTAGAGCAACCTCCAAAATTTCGCACTCTGGTTTCGCGAGTGACGAAGACGTAACAGGTCCACAAAACATTATGGCATTTGACAGCAGCTCCGAAGACGAGGAAGGCTTGGGACCGGATAGTTTTCTCGGCGGGAAATTTGCGGACGTCAACTCGTCTCTCTTTGACGTCGATGGCCGGCTCAGTCCTGAAGGCAGTAGCCTGGGTACAAACGGAAGTGCGGACGGCTTGGATAGTAGCGCAGATGAAAACGTGTTCGATTACGAAGAAAATGACTCAAGTTGCGACGAGATGAAGGTAAAAGGATCAAGAAAGCATTCAAAGAGGCGGATTGGTACTTCACGTTCTCAGAGCAAAGACAGTTTGGATAACGAGAATTTTGAAACCGATGAAGCTTGCTCTGTCTGGTTGGGTACAGAAGATGGATGCATCTTCCTGTACCCGGCAAATGAATCCCAAAATAAGAAGTCGAAACTAAAAGTTCAACTATCTGGCTCAATTCAATGTATTCTCTATGTTGATAATCAAGTCTTTCTTTCACTTTCGACGGGACACTTATACATTTACAGACGACAACCAGGTTGTGCATGGGAAGTTGGCAACCCCGTGATGCTTCATATTGGTGACTCGACAGCAGTCTCTTGTATGACAGCAATTCACGGCCGCTTGTGGTGTGGCTTGGGTTGTAATGCTGTAGTCGTCAATACAACCACTCTGGCAGTCGAGACGTCCTTCAACTGCAGTTTGGACAAGGATCGCTCTGTGTACCGCATGGCCAGCTCGGGGATGGGTGTGTGGATTTCACTTCAAAGTTCCGCTGCTGTTAGATTGTTTCACGCAACGCGTTACGAGTGTTTAGCTGACGTGGATGTAGCACCACCTGTTCATAAAATGCTTGCAAGTTCTGATGCAATCATCCGACAGCACAAGGCAGCGTGTTTACGGGTTACCGCTTTACTGGCCTGCAAAGATCTTTTGTGGATTGGCACTAGCGCAGGCGTGGTTTTGACATTACCGCTGCCAACAATAACTGCTAGCACAGCATCTTTGCGAAACTGTCCATCGGCAACTGCGTCCTTCCACGGACATACTGGGCATGTGCGTTTTCTTACCGCTGTTGAGGTGCCAAAGGAAGGAACACAAGACAAAACCAATGAACAGGGCTCTGGTTCTTCACCTTCAAGTCCCACGACTACCTCTCAGTCCAGCAGTAATTCCAATCGAGATGTTTTGATTATTAGCGGAGGAGATGGCTATGAGGACTTCAGGGCAAGCTCCACTAGTGAATCCGCTGGACGTGATGATAGCACAAACCATCTCCTTGTTTGGCGAGTATAA

Protein

XP_074619745.1

MSTRAAKFDVEASRSLARNTTQPLGARSEGRLEVREERVSNRSRIGTIEAEPTEVNISLKKAFGKTNENGSQSVKISKGRVHAASATGGESSQQTPEYAPSAPYGSSKNTQDYSCKASSNLYTSMQKPASERNKFMDNIPGIPAVTEQSSPRGDFIGRTVFPPPSVGNYGQNVAYPSTPSSDIKPMSLDSNDTTDLIFHKPSANRHTAEARGRIQAETEMEWNASRENNYRLREEHKNRSVPSEFHHARARTGRRCKDGVNVVYSEAKFSGSNRANISRRSNPASCYSESPTDSQGSSTESESSSDASIKRRRRIRRKPSNKSIGSSIYGEDNTSESENQSVSELSASDNVRSRSKRRTQSSREEDDFGSVVDLKEHRSGTFNRLRSSSLTSVSSFESAGISGDFSSRNQSPLLSPRGSSISKVKKIQIRSLTSFADSQIYNKENLPQRRRSTEERETFRMRPRIETAPKEKRSRSLVSRQGSESPSLSRNPFGLKSKNFVQKASKELLSSDSECNLASDKEHMSTQSTSKMFDEQVGQEQLKRESNSDVAIQTETSDSRWNFNIANEHQASAFLPIQANDRTGLNVTDQDTFISDSSAEKLATSSGNVLVRPVARRDNSRPLSIVQETEESADVLQKDETDHTLEESKSSGFSPLYSEDSSSRTYMMEVCNETRQALKEFDPKATGTSPVNEVDLISFEDGKGGGKEPVKKRTKRMTRPRIPTILGSEEDSGRKSIDADLQTLEAKRNLDDENEVTLKKGMFDGSKRDAIIEHDSEAESTPQPASEVEDNQVVDVLHHDINNLNKVPDDSVHSSKNKDTIDDMKQKIPPKRKLMKRASLPVIRTELYKDEAMIVEDPPRLETVKITDSPSLRKAETIGDLSLDNHSGHLEAFSCSDIDSKELLFPEGKNLDECSSSLGQVPSPSPSQISFDALSLTTSGFSEADSNQVSTGDLDVGYDILNMDPTANGKSVDYAWRSQSDPSHGIQLENTVAELQAHRNSNSEPNLSGEKLKEESEQLAKRINGGNQGEITRKTCGPDNNNDDDDDKESELSPDDGCYELDRPERHIKSVKRANSAPEPVTSSSPRAQRIANSIAVEKAQVKLNKLAAMETIIEVPNAEPSVQMTEKVKLEQIRSSPLEGSCTSPMSGGMAKEEKRKSSQPKEQGKPQKSKHDLRAHVVKNLLDTEASYVLNLQFLVSSYYKALKKQENSGIVEPAQVDEMFYQIPEILLCHEFFLKQLQARMNEWHDKQKIGDIFVSSFTKCFLVDAYSAFINHFLQARAAVRVATESRPAFVRYMEQCSRDHKEKLTLQDLMIMPVQRIPRYELILKDMIKHTPHDHPDHGSLQLALGEIKTLADRMNRGEKEVDQAEREAERLRDLEATIEGMTELVSPTRRLIRQDLVAEVKGTITKKDRCLFLFNDMLACATVKRRANALRRGSLSIFSGSGTEFNKYKLLWRLHLDYVEIYKSSPEAQRRNSLEKQLEKLDVDMSSLSKISALADTLTIAHIALDAAIRELMNDVNRQISEKQIPLQPNTSTKLELHAQTEEGEELFQFLFLETEIKNSWEAYFEDAKQKLAYAKDTFPPEFQYCIPINKTRSGMQFTCASPCQVPHVLDRGNHCGSGDVWVCNSDGYVGQVCILRMGTQIQPCGSITVCMSRILCIAPVPGTKFVGLETLQSESETKSDTQSISVTSEKSAKTRATSKISHSGFASDEDVTGPQNIMAFDSSSEDEEGLGPDSFLGGKFADVNSSLFDVDGRLSPEGSSLGTNGSADGLDSSADENVFDYEENDSSCDEMKVKGSRKHSKRRIGTSRSQSKDSLDNENFETDEACSVWLGTEDGCIFLYPANESQNKKSKLKVQLSGSIQCILYVDNQVFLSLSTGHLYIYRRQPGCAWEVGNPVMLHIGDSTAVSCMTAIHGRLWCGLGCNAVVVNTTTLAVETSFNCSLDKDRSVYRMASSGMGVWISLQSSAAVRLFHATRYECLADVDVAPPVHKMLASSDAIIRQHKAACLRVTALLACKDLLWIGTSAGVVLTLPLPTITASTASLRNCPSATASFHGHTGHVRFLTAVEVPKEGTQDKTNEQGSGSSPSSPTTTSQSSSNSNRDVLIISGGDGYEDFRASSTSESAGRDDSTNHLLVWRV

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96PE2	Rho guanine nucleotide exchange factor 17 OS=Homo sapiens OX=9606 GN=ARHGEF17 PE=1 SV=1
Q80U35	Rho guanine nucleotide exchange factor 17 OS=Mus musculus OX=10090 GN=Arhgef17 PE=1 SV=2
Q21653	Rho guanine nucleotide exchange factor osg-1 OS=Caenorhabditis elegans OX=6239 GN=osg-1 PE=2 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003382 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF19057 all species →	PH_19	PH domain	Domain	Interproscan
PF19056 all species →	WD40_2	WD40 repeated domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR039919 all species →	Family	Rho guanine nucleotide exchange factor 10/17	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12877 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20689	ARHGEF17; Rho guanine nucleotide exchange factor 17	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.