Gene detail

Detailed information of XP_074619971.1 in Acropora palmata

Genomic Location: NC_133885.1:16484582...16502968
NR annotation: XP_029208245.2, RNA-binding protein 26-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074619971.1

ATGCAGATTCAAAGTGTAGAAGCCTTGAAGTCCTGGCTGACCACTCGTTTGGAATCAGTTTGTGATGCTGATCCAGCAGCCCTGGCCAAGTATGTTGTTGCGTTGGTGAAAAAGGACAAACCGATGGAGGAATTAAAGGATATTTGTGTTGATCAGTTGGAGGTTTTTCTTTCAGATGAAACGGCCAACTTTGTAAATGTGCTGTTTGATGCCTTGACAAACTCTTCCTACATGCCACAAGTAATGGTGGAACCAACTGTGGCACCCATTGCAGTACCTGCTCCTCAAGTAGTAATGCCAATCACACCAGCACCTTCCCCAGTCAAAGCACAAGAACGGCCAAGGAAAACTTCAGTAACAGAAGATGTTTTGACGGCACGAGTGCAAGAAGAGCCTGATGATGATGAGAGAGATTTCAAAAGAATAAGACGAGGTGGGGAGTCTAGCGATCATAGTACCGACATAGCAAGCTCAGTTGTTCCAGGCAGCGGGGAAAGGCCACGTAAAAGAAGAGCTGATGAGGAAAGAAGCAAGGGTGACTTCTCAAAGATTCCCAAAGAAGAACAAGGAGGAGCAAGAAGAGTGGACTCTGATGACTCCAGAAATGTCAATGTTTATCCTATCCCAAGCTCAGTGCACAGAGAAAGGGGTATAAAACATGGCCCAGAGGGTGGGGATGCGGTCCTTCGTCCTGGAATGCACCCCCATGACAATCGCAGGGGAAGACGTGGTAGTCCATTAAGGGATCACAGGGGTGGAAGAATGGGGCGGGAACGTATGGTACGGGACAGGTACAGAGATGATCGAATGCGTCATGACCGAAGAGATGACAGAGAAAGGACTGGTGCTAGGAAGTCACGTTGCCGTGACTATGATGAGAAAGGATTTTGTATGCGTGGGGAGCTTTGCCCTTTTGACCATGGAAATGACCCTGTGGTAGTTCAAGAGATGCTACCACCTGGAATGTTAGGATTTCCAGCGTCTACAGGACCTCCCTTCCTTCCTGATGGCCAACCAATGTCTGGACCAGCTTTGCAGGGAAACCCTGGCCCTTTGCCTGGAGGTTATCCCACTACAAACTCTCAACCTCCTCCCCCTGGCACTGCAAATGCGTTGTCCAATGATGGGCCAAAATCACAAGTACCTCAAAAAGGGGCTGACAGCAATGTCCCTGCAAGTGGCCCTCATTCCTCAGCCCCATCTGGTATGGTACCTCCAGGCAATCAAGCACCTGTGATGCCACCACATGCTGTTCGTATGATGCAGCCACGGTCGGTTCTTCGGGGGCAAGCTCCACGCCCTCCTTTTGGAAACCCATATGAAGATTCATACAATCCAGAACAGCCCCAATTTGACAGGACACCTGTATGGATGAGGCTTGGAAATGGCCGCCCGCCACACATTCTCCCTCCACAGGCAGGAGTCTTTCCACCTCCTGTCCGTTTGCGATCGCGGGGAGCCCTATTGCCTGTTACTCCATCACCAGCACAGCTCACAGTACAAGTTCCAGGAATTTCAGCCCCTGACTCAACAGTACCTACCCAACCGGACAGAATAGTCATACACTCAGACCTAAACAAGAACGCCCCTGCAGTGCCCCAGGACCAACCACTTCAGCAACCTCAGATCCCTGGAATACCTCAGCAGAATGCCACCGAGGTCTCAGCCTCTGTTAATCATACTGATCCAACCAAACGTCAGCAGAATTTTCCAAGGAAGTTCACTGACACTCTGGAATTGAAGAAGATCCCTCGTGAGCTGAACAATATTGCTAAATTGAATGAGCACTTCCAAAAATTTGGTACTATTAAAAATATTCAGGTTTGTGCTTTTAATGATCCTGAAGCCGCCCTGGTTCAGTTTTCACATCACAGTGAAGCTAAAGCTGCACATTCCTGCCCTGATGCTGTCCTTGGCAACCGATTTATTCGTGTATTTTGGCATAATCCTGATAGACCCCAAAACAATAAGGATGGAAATGCAAATTGCACAGTAACGTCTGGGACTGCTAACTCAGGCACAGCAACAGTTGAGTCAGGAACTAAAGAAGAAACTGCCAGCAAGACTAATGTTGAAACAAAAGCTAAACCAACCATGTTTCAAAGTGGAAAGACAACATTCTCAAAGACTCCAAAACCTGCAGCTGTTCATGTATCTGCTGCTACTCCAGTCATGACAAAGAGACAACTAGAACTCCAGAAACAGGAAGCAATTAAGAAGAAGCTAGAGATTCAAAAACAGAAGCAAGAATTACTCAATAAGCAAATCAAAGAACAGAAGTTGTTAATTTCTAAACTTGAGAAGAAGAATCTTGGTTCTGCTGAAAAGGATCTTATAGTGAAGACCATAAAGTCATTGAGTTCAAACATTGAAGCATTGAAAAAAGAAGTTGAACTGGCGGCCATGGCAGCTAAATCCAAGGAAAGTCCTTCTCAGGCCCGGCAGATTGCCCAGAAAGCAATTCTTGATCAGGAACTTGATTTGATTACACATCAAAACACAGGAGAAGATACAACAGAGCTGATGAAGAAAATGGAGGAACTAAAGCAAGAGGCAAAGTCCCTTGGATTGCTAGACCCCCAACCTAAAGGACGGGGGAGAGGCATTGGGAGAGGGCGTGGCAGGGGAATCACTCTTAGAACCAGGCCTTTCCCAAGAACCACAAGGGTGTGGACAAGGGACAGTGCCTCTCTGGATCATCGGACAACACAGATCACTGTTGCAGATATAACTCCAGAGCAGAGGGAAGATTTGGCTGAGCATTTTAGGGAATTTGGCATTGTTGATAATGAAGACTATGATGAGGCCACAAGGATTATGATCTTGACTTACAGGACAAGAAAGGAAGCAGAAATTGCATACAACAAGGGAAAGACATTCAAGGGAAGAGCCCTCAAAATTTCCTGGTATCGCGCTGCACTCACCCCTGTGTCCCCTTCAGCAGCTGTGACAACGCCAACAACTCCTACTGTGCTCAAGAAAGTTGAGGAACAGTTGGCAATTGATTTCGAATCGGAGTTGGGGAAGCACGAGTTTGATCTCGACGTCGACGAGGCATTACTGCTGCGTGAAGATTTTGATGAGGAGGAAGAAGAGGAAGATGAACGGCCGTGGAAGAGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T8P6	RNA-binding protein 26 OS=Homo sapiens OX=9606 GN=RBM26 PE=1 SV=3
Q6NZN0	RNA-binding protein 26 OS=Mus musculus OX=10090 GN=Rbm26 PE=1 SV=2
Q2T9I5	RNA-binding protein 26 OS=Xenopus laevis OX=8355 GN=rbm26 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004222 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480 all species →	PWI	PWI domain	Family	Interproscan
PF14605 all species →	Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045137 all species →	Family	RNA-binding protein 26/27	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002483 all species →	Domain	PWI domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14398 all species →	RNA RECOGNITION RRM/RNP DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13192	RBM26; RNA-binding protein 26	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.