Gene detail

Detailed information of XP_074620122.1 in Acropora palmata

Genomic Location: NC_133885.1:5614587...5634479
NR annotation: XP_029209299.2, solute carrier family 26 member 6-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074620122.1

ATGAACGATTCAGAACTTTTGGAGGCTCAGGCTAATTTGCGAACTCATCGACGCCGCCGGCGTTACAGAATTAATCTCTCACGTCATGTATACAACGAACAAGAATTCTCCGAGTCGTTCATCAAAAGTGATGAATGCGTCTCAAATTCGGAAAACGAACCATCGTTGATTGTCAAAACCATCAAGCGTTACTTTTCGTCGTCCAGATGTTCTCTTAGAGCTGCGTTGAAGTCTTGGTTCCCGATAATAGAATGGTTATCCTGTTACGATGTTCGCAGAGACTTGGCACACGACATTGCTGGTGGTTTAACAGTAGCTATTATGCATATTCCTCAAGGTCTGGCATATGCTATGTTAGCTTCGTTACCTGCGGTCACAGGCTTATATACTGCGTTTGTTCCTATTCTGGTTTACATGGCAATGGGAACTTCACGGCATTTATCACTTGGTACCTTTGCTGTGGTCTGCCTTATGGTGGGTCATGTGGTGGAGCGTGAAACAGAGCATTTTGCTGCTGTGGTAGCTGCCGCACCCACCCCACAGACAATAATTGATAAATCATCAGGAGCTGGCCTTCTGCGCAGTGCAATATACAAAGAAGAGGCTAACAACAGTTTTCCAAGCCAGGAGGACATGTTAGATGAAAAGAAGTTAGAATTGGCTATAGCTCTTTCACTGCTGGTTGGTCTTTTTCAGTTTGTCATGGGTCTTCTCAAGCTTGGATTTGTGGCAGTGTACTTATCAGACCCAATTATCAGCGGTTTTACTACTGGTGCTGCTGTTCTAGTTTTCACCAGCCAAATAAAACACATTCTTGGTTTGAACATTCCGCGATACTCTGGGGCATTTGCTTTAGTACAGACTTACATATTCTTATTCAAGAACATTACCTTGTCGATACCTGGAGCAATTATCACTGGAGTTGTCTGCATTGCACTTTTGATTGTACTCAAGTTTGTCAGTGAAAAATTGAAGCATAAAATGAAATTCCCAATACCTGCTGAGTTAATAGTGGTTGTTCTAGGAACATTAGTCTCATACCTTGTCCATCTGAATGAAAAATTTCAAGTGCCAATCCTCGGCAAAATCCCAATAGGGATTCGCGCTCCATCTGCTCCTTCCTTTATGCTGATGCGCAAAATGGCTCCTGATGCTATGGTGATTGCTATTGTTATATTTGCCACAAATGTTTCTTTGGCAAAAACCTTTGCCAGAAGAAATAATTATGTCATTGATTCAAATCAGGAACTTTTAGCTTGTGGCTCAGCAAATATCATGGGATCATTCTTTTCTTGCTTTCCTGTCAGTGCTTCCCTTTCAAGATCAGCCATTCAGGAGAGTATTGCTCGGACACAGCTTTGTACTATACCGGTCGTTGCAGTTGTTATCCTTGTATTGCTTTTTATTGCTAGATTGTTTTATCACTTGCCAAAGGCCATCTTAGCTGCTGTCATTATTGTTGCACTGAAAGGATTATTCCTTCAGTTTAGCAGGCTTAAACAGCTGTGGAAAATTTGCAAACCAGATGCAGTTGTGTGGTTTTCAGCTTGGCTTGGAGTCATTTTGCTTGGTATTGATGTTGGTTTAGGAGTTGGAGTTGTTATGGCCCTTGTGGTAGTCATTTGGAAATCATCAAGACCACCAGCATCACTTCTAGGTCAAATTCCAGACACTGGAATCTACAGAGATCTTCAAAGGATTCCTTCCGCCAGAGCAGTGCCAGGTGTGAAGATATTCAGATTTGAGTCAGCGGTATTTTATGCCAACTCAGAGTATTTCCGCAGTTCTTTGATAGAATTGACAGGAATCGACCCACAGAATCCCAATAAGCATAGCAGCGTTGGAATCAACAGCTCCATTCACTATAGACCCAATGTATGTCACCCTGAAAGTCCATCGATAGAGGTCACCAGGCCAGAAGCTTCTGACTTTGCTGCAGCTGATGAAATATTTCAGCAGAATGGGGAAATTCAAGTCATGATGGATGACTCTGAGGACAGGGAGAATTTTTCAGGGAATAATTCAACTCCAATTCATGCTGTCATTGTTGATGCCAGCACATTCAATTTTATCGATACTCAAGGAGTGAACACTTTGTTGCAGCTTGGTGTTGAATTTGAAAAGATTGGAGTGAAATTTTACCTGGCACACTGTAGATATCACATCCGCAAAATGTTGGAGAAAGCTGGTTTCATTGCAAGAATAGGCACGGAGCATTTGTTTGTTTCTGTACATGATGCAGTTATACATGCTGTTGGGATTCATTCAGAGAATGTATCACATGCCTCAGCGATGATTAGTGACACCGAATCAACAAATATGAATGCAGAGGCAGAATTGAATAGTCCATTGGCAGAAGATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CIW6	Solute carrier family 26 member 6 OS=Mus musculus OX=10090 GN=Slc26a6 PE=1 SV=2
Q7T2C4	Prestin OS=Danio rerio OX=7955 GN=slc26a5 PE=2 SV=1
Q9BXS9	Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00916 all species →	Sulfate_transp	Sulfate permease family	Family	Interproscan
PF01740 all species →	STAS	STAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011547 all species →	Domain	SLC26A/SulP transporter domain	Interproscan
IPR036513 all species →	Homologous_superfamily	STAS domain superfamily	Interproscan
IPR002645 all species →	Domain	STAS domain	Interproscan
IPR001902 all species →	Family	SLC26A/SulP transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11814 all species →	SULFATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015106 all species →	Molecular Function	bicarbonate transmembrane transporter activity	Interproscan
GO:0015108 all species →	Molecular Function	chloride transmembrane transporter activity	Interproscan
GO:0015116 all species →	Molecular Function	sulfate transmembrane transporter activity	Interproscan
GO:0019531 all species →	Molecular Function	oxalate transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074620122.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074620122.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

57TPM > 0

2Conditions

27.9Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	31	8.90	27.93
all_coral_tissue · baseline	38	26	10.24	25.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	27.93
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.17
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.80
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.57
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.12
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.02
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.26
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.18
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	22.12
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.69
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.22
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.22
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.09
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.07
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.79
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.42
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.87
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.66
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.14
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.87
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.60
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.34
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.29
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.67
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.23
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.19
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.12
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.98
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.94
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.56
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.08
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.80
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.32
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.11
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.01
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.93
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.49
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.19
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.06
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.82
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.29
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.45
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.41
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.86
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.28
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.66
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.60
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.10
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.62
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.45
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.58
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.47
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.28
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.67
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.88
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.54
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.22
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.