Gene detail

Detailed information of XP_074620170.1 in Acropora palmata

Genomic Location: NC_133885.1:19837988...19867645
NR annotation: XP_029206012.2, uncharacterized protein LOC114969842 isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074620170.1

ATGCGAAAGGCAGTTACCAAAGTGAAAGGGCTTACAGATCTTTCGGACAAAGCTAAAATTGCGGAGAAAGGCGAAAGTTTAGCTAAACGAAAAGGGAATTCTGCGACCGTCACAGAACGCCTAGCCTCAAGTAATGGACGACAAACATCGGCGAAGAAATCATCAGTAACAGCAAAAGCAACATCTAGTGACACGGGAAAATCATCTGCCAGGCGAACACCAATTTCACACCATGCAACCACTCCACCAAAACCAGCAACCACTCCACCAAAACCAGCAACCAGACCCAAACCAAGTTCCACAGTTGCTGTAGCCTCTGTAGCTACCAAGAGTTGTCCAGCTTCACAGCACAGAAAAACAACAACAAATTCTTCAGCAGAATCAGCTAAGAAGAGATCACCTCAAAGTGTACCTGTACCTCCTAAACCTCAATCGAAAACAACAGTTCCCCTCTCACAGAAGACAGGCAGGGACGACCAAAAAACAAAAAGGAAAAGTGAACTTAGAAAGGAGAGTAGTTATGATGCAAGTGACAGTGATTCTGAGAAAGGGAGCCGAGATAGATTAAACACAGATGGTGACTTTGGGTACGAAACTGGGTCTCTTGATGGTAGCGATGCATCAAGTGGCGAACTCCTGAGTCCATCAGCCAAAGATGAACAAAAAACTATTTTAACACCCAGTCAAAGTGATAATGGTAGTAGCTGTATATATGCGGAGGTTGACTTAACACAATTGCCTGTTGTAGGAGAAGGGAGCACAGAAGTGCAAAGTCCTGAAACAGAAGTAGAATATACTGAGCTCTCATTACATCGTCAAGGTAGTAGTGACAGTGCATCCTACACGTATGTTGGGAATGAATTTCGGCCTTTGATTGTGCAAGAAGGTATTGGTATTGCTGCACCTGTCAAATCACAGACAATAAGTAAAAATGTAAACACCCCAAATGACGATGGAGTGGACCTGTGTAGTAGTGGAGAACCAGCACCTTCAGAGTATGTGGAAGTTAAAATTGTTGATGGTGGCTTTGACAGATCAAATATCAAAGTAGTCCCCTCAAACCAAAGGACTCCAGACAAGGAAAATGAAAATGCTACTCGTATTATTGGACCAAAGAATGATCTTTATGCAGTTGTGCAGAAAGAGTCTAAAGGTGTTGAAAACAAGGATAATAGCACACAGCTACCGAGGCAAAGCAGTCCAATGCAAAAACCAATTGTTGAATTAGGTGATGTTGTGCCAGCCATACCAGGAGGTAGGAAAGACTCAAACATGTATCAAGCTATCACTGGAGAGCTACAGAGCATGATCATAGCCTGTGATAATGTGCAATTTGAAGAGAGATCTTCAAGGAAAAATTCAGTGGAAAAAAGGACAACCTCTGAAAAGAAGAGGGTACCTCCACCCATGCCAAAGCCTTATGCTGGGTCGGGACTGAAACAGCTTGATACAGAAAAGGCACAAAATGGAGAAGCCAAAGAAAATACTGTGAAAGATACAGATCCTCAGGACTGTCAGGTTATTTATGCCACGGTTCAGAAACCTTCAAGAACTGAGAAAAGTCAGTCGTTGGAGTCACTTGACCAACTGAGAATCCCTTCACCTTCTGATGATGATAATGATGAGGATTCCAGTGATGGAGAGATGCCTCCACCTCTTCCGTCAAGGTTACCCAATCTCGAGGAGACCTTAAAGCGAACTGAAAAATCTGAGAATTGTGCTGATTTTGCTAAACAAGAGCAGGTTGAGAAGAAACCTAAAAAGGGTGGTGCCTTAAAGTTGTTTAAAAGGAAACATCGCAGGCAGATGTCAGATGGAAATTTGGTTTTGGACAAAGATATGGAGGGCCGTCTTACTCCAAGTCCAAAGTTCCAACATCAGCGTTCGAAATCACAAGCAGACGTATTGAACATTGTTGATAATGAACAAGGCCATGTAAGACACGATAATGCAACCGAAATGTACACAGAAATTGACATTCAGCCCCAAAAGGTTGAGAGTCCATCCGACAAGAACCTGCCTATCAAGCCATACATGGAAGTTGACATATCACAGCCTCCTCTCACCCCTACAGAGTTACAGGAGAAACCAATTATTGGAGGGGAGAGTGAGGATTACAGTGGACCATATGAATTGCCTGAGGGATGGAAGGAGGTGAAGAGTGACAGTGGTACTTATTACTGGCATGTTGCTTCTGGGACAACTCAATGGACATTACCACAAGTGGCAACAAGACCAAAGAAAAAAGTAAGTGAAGATACAAAATCTTCAGAAGCAACTGAAAGGCAAAAGGTGCTTAGTTTTCCTGTGCATTCTATGGGTTGGATTGAATTAGAGGAAAGCCAAGTTGCTCCACATAACATGAGTGACACAATCACAAACTGCATCTCATCATTGGCAGAGCTTCGCAAGGACCTCTGGAACACATCAGAAACCTGGGGAGAGGGGAAGGATATCAGACTTTTGTTGGAAGGAGATGCTCTTAAACTTGTTGAACCTCGAACAAAAGATACTTTGTTAGTTCAACCTGTTTCTAAAATGAGAGTGTGGGGTGTGGGCAAGGAAGATCAAAGAGACTTTGCCTTTGTGGCCAGGGATCCTTCAACGGGGAAACACAAGTGCCATATGTTTCGTTGCCATGGTAGTATTTCAGGTCGTGCAATCACTAATGCCTTGCACGACTTGTGCAGTAAGATTCTTGAAAAAAAGAAAAAGGCTCAGGAGAGTGACAGGAAGATGTCAGCACAAAAGCCATGGTCAGACATTATCAACACCCCTCCACCTTCATCAGCAAGAGATAATGCAAGTTTTAATGAGAAACCTCATGTGGAGCCAAAGAAGAGCTTTTCTGCTAAATATGCTGGGAGCATAGATGTGTCCAAACCCACAGGTGTTGAGATTCTAAACAAGGCTATCAACAAGCTTACAAGCAAAGGTGGCATCTGGAGAACAATCTTGATAGAGATAAGCGTTTCTCACATCAAAATAACAGATTGTGCGACTCAAGAGATGATTTGTGAAGATAGAGTACGATTTATGTCATTTTTCGGTGTGGGTAAGGATGAAAGACTCTGTGGCTACATAGTGAGCACTGCTCCAGAAGTGTACCTGTGTCATGTATTTCATTGCACTCCAAATGCAGCAGCCCTTACAAAAGCATTAGCTGAAGCGTGCCAGCTTCGTTTTCAGAAATGTGTGGATGCTCATCCAGAAATCATGCAGAAAGTAGCTGTTACTGAACAAGAGAAACTGAAAGAAAAAGTTGAAAAGGATAAATGTGAAAAAGATAAAGCTGGTTTCATGACAAGTGTCCAAGGGCTGCTGGGAAAACTGGGACCAAAGAAAGGGGGAGGGAAGAAGGAAGAGAATCAGGGACCAGACAACAAGTCAAGCAACATTCCTGTTATAACTTGTAAACCAACGCACACATTTATGGTCAAATACTATGGAGCTCTGCCTGTAGCTGTGGGGACTGGGATCGAGACTGTGGAGGAAGCAGCCAAGCATTTAGCAGGTGGAACACTGCTGGTTTGTCAGTTGGATGTGGCACTAAATGGAGTGACGCTATACGACAGTCAAAGAAGTACTTTATCAAAGAGAAATTTGGATGCTGATACAATATCATACTGTGGCCTTACAAGCAACAGAAGCCACTTTGGACTAATACAGAGTATGGGGGGAGGAAAATACATCTGTCATGTGTTTGCAGAGTACAAGACCAAAGCAGCTCCAATTGTGGCAGCAATACACGAGACACTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00213	Amyloid beta precursor protein binding family B member 1 OS=Homo sapiens OX=9606 GN=APBB1 PE=1 SV=2
Q9QXJ1	Amyloid beta precursor protein binding family B member 1 OS=Mus musculus OX=10090 GN=Apbb1 PE=1 SV=3
P46933	Amyloid beta precursor protein binding family B member 1 OS=Rattus norvegicus OX=10116 GN=Apbb1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003324 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR039576 all species →	Family	Amyloid beta precursor protein binding family B member 1/2/3	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14058 all species →	AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001540 all species →	Molecular Function	amyloid-beta binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074620170.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074620170.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

81TPM > 0

2Conditions

87.9Max TPM

48.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	45	44.57	86.64
all_coral_tissue · baseline	38	36	52.57	87.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	86.64
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	70.18
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	69.30
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.70
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	67.13
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	63.85
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.51
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	61.19
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.55
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	59.06
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.59
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.18
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.44
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.57
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.86
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.83
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.30
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.30
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.19
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	50.84
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	49.36
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	49.13
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.14
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.24
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	40.26
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	40.25
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.39
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.25
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.50
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.76
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.42
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.19
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.53
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	35.17
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	34.32
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	33.67
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.49
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	30.27
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	26.15
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.81
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.57
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.08
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.34
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.29
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.59
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.92
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	77.03
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	72.03
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	71.43
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	70.17
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.25
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.14
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	68.55
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	66.13
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	62.93
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	62.53
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	61.12
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.99
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.97
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	57.88
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.18
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	55.16
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.14
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.23
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.11
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	52.93
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.43
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	51.11
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	49.73
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	48.59
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.86
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.06
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	43.48
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.76
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	39.81
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.54
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.18
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.81
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.52
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.