Gene detail

Detailed information of XP_074620294.1 in Acropora palmata

Genomic Location: NC_133885.1:5679513...5708270
NR annotation: XP_029209310.2, 85/88 kDa calcium-independent phospholipase A2-like isoform X1 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074620294.1

ATGGGAAGCACTTTTTCAAGTTTCCGCGTGGAAGAAACGGTTTCGACACATTATAATCATGTCACCGTTTTGGAAAAGAAAGTTGATGGTTCGGCGAGTTTGCGATTGTATCATGTCACATCTAATCGATTCGAAGCTGTTTTGTTTAACCCCAAACATTCACCAAACTGTTTCTGTCTTTTCCGAATCACGGAAGAAGTGGAGGCAAGGAAAAAGTTCAAAGTCCTTCATAAGAAGCTTTCACCATTCTATCAAAGTTCTTCTAAATGTTACAATAGCACTGTGCTTCAAGAACTAATTTCTTGCTTAGAACAGCACCCTGATTGGTCGTTAGCCCATGTTGCTTCACATGTGGGTTTGCCTGAGTGTTTGAAGCATAAGGCAATTGGGGATAGCATTGACAGCTCATGCAGTGATAAAAAGAGGACTCCTTTACATCTAGCATCCAGGAGTGGTAAACTGGAGTTTGTTCAAAGTCTAATGGATTTTGATCCAAAACTTCTGGTCAAAGACAAACTCGGCAACACTCCTCTTCATTACGCTGCTCAAAAATATCCAGAGGTTGTGAACTCCTTGCTCAAAAAAGGTCATGAGTTAGGAAACCAGTTGTCTGAGGTAGTCAATGCAACGAACTCCAAACATGAATCAGCTCTTGATGTGGCATGTCACTATTCTCAGAATGACAGCGTTCAGATGTTACTCGAGGCAGGAGCTGATCCAAGAAAATCTCATGAAGGAGTTCATGCGATTCATACAGCTATGAAAGTGAGGAGTGAGGCGTGCGCTGCGACACTGTTAGAGTTCCACCCTGAGCAGATTCATGCCCGAGATACTAAATATGGAGGGACACCACTTCACTGGGCGAAAACCAAAGAAGGAGTTGAGCTGCTTGTCAATCGTGGAGCTGATATAGAAGCACAGAATAATGACGGCGAAACTCCCTTGCATATTATGGCTCGTCGCCGAAGACTCGGCTGTGTCGTTATGTTGTTAAGTGTGGGAGCCAACGTAAACGCGCAGAGCTCCGATGGATCTACGCCGCTACACTATGCTGGAGTTGTTGACGAGCTAGACATTGTTCGTGCGCTTATTGTATTTGGCGCCGATGTTAACTTGACGAACAAACGACACGAAACAGCCCGGCACAAGGTCACTGTTGTGAGGCAGCCTCGGTGGCGTGATGTTGTGCGAGCTCTTGGATTCGTCGGAGCAGCGCCTTGTGATAAAAGCCAGAATGGATGCACATTGGAATGCAGTAAACCCTTCCAAGAACAAATGGTGATTGGTGAAACTGGTGTCAGAGCCGACCCCAAGTTACCAGGTTACCAAGACGTCATCAGTATAACTGCTGGCTTGGTGTCCGCTGGACTGTTTCAGTCGAGCCCTGGATTGGACACCGTTGATTCTGGGCAAGCGGCACAGGGTTCTCACAATGAATCTATATTCAAATCGCTGCACGGGAAAGAAAGTGTTTTGACGTTGGATGGAGGTGGTATCAGAGGACTGATTCTCATTCAACTGCTGTTGGCCTTGGAGGAGTTTACAAAGCAGCCAATTGTGAAATTGTTTGATTGGATAGGAGGCACAAGTACAGGCGGTATACTGGCTCTTGCGGTTGCTCATGGAAAATCCGCGCGGTGCTGTCAGGGGCTGTACTTCAGGATGAAAGATTTGGTATTCCGGGGACAGCGGCCTTACGATTCCGAACCACTGGAGAAATTTTTGCGGCAGGAATTTGGAGAAGATGTGAAGATGACGTCCGTATTGTACCCAAGAGTTCTTGTCACTGGCGTTCTGGCTGATCGCCGTCCTGCAAGTTTGCATTTCTTTCGGAACTTTGACGTTCCCGATGATCACTGTGGTGACAGTCGTGGTAAATTAAATTTCAAACCTCCTCCAAAACCTTCAGAGCAGTTAGTATGGCGTGCTGCGCGCGGTACAGGAGCTGCTCCGTCCTTTTTTCGTGCCATGGGTCAATTCCTAGACGGAGGACTGATCGCTAACAATCCAACCTTAGATGTAATGACTGATATTCACAAGTACAACACTTCGGTTAGGGGCGAACAAGCCGTTCCAATGGGACTGATTGTGTCCCTCGGTACGGGTATCCCGCCTCCAGCACACGTTCCTTCTTTTGACGTGTTTAAGCCCGAATCAGTCCTGGATGCAACGAATGTACTGATGGGCGCCCGTGCGTTGGGAGAACTTCTCATTGATCAGGCCACTGCTACACACGGCCCCGTTGTTGAACGAGCCAGGGCGTGGTGCCAGATGGTGGGCTTACCCTATTACCGCTTTAGTTCACCTATGTCATACGATGTTGGCCTGGATGAAACTGACGATCGTGTTCTTGTCCAAATGCTCTGGGAAACTAGAGTTTACGTTCTTCAACATTTCAACGAGTTCAGGGAACTCGCAAACAAGTTGACTTCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60733	85/88 kDa calcium-independent phospholipase A2 OS=Homo sapiens OX=9606 GN=PLA2G6 PE=1 SV=2
P97819	85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus OX=10090 GN=Pla2g6 PE=1 SV=3
P97570	85/88 kDa calcium-independent phospholipase A2 OS=Rattus norvegicus OX=10116 GN=Pla2g6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004261 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01734 all species →	Patatin	Patatin-like phospholipase	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR047148 all species →	Family	85/88 kDa calcium-independent phospholipase A2	Interproscan
IPR002641 all species →	Domain	Patatin-like phospholipase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24139 all species →	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016290 all species →	Molecular Function	obsolete palmitoyl-CoA hydrolase activity	Interproscan
GO:0047499 all species →	Molecular Function	calcium-independent phospholipase A2 activity	Interproscan
GO:2000304 all species →	Biological Process	positive regulation of ceramide biosynthetic process	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16343	PLA2G6, IPLA2; calcium-independent phospholipase A2	EC:3.1.1.4	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.