Detailed information of XP_074620802.1 in Acropora palmata

Genomic Location: NC_133885.1:20209274...20242671
NR annotation: XP_029195174.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114960864 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9UK61Protein TASOR OS=Homo sapiens OX=9606 GN=TASOR PE=1 SV=3
Q2T9I9Protein TASOR OS=Xenopus laevis OX=8355 GN=tasor PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003273 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12509
all species →
DUF3715Protein of unknown function (DUF3715)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022188
all species →
DomainTASOR, DUF3715Interproscan
IPR046432
all species →
FamilyTASORInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16207
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005654
all species →
Cellular ComponentnucleoplasmInterproscan
GO:0045814
all species →
Biological Processnegative regulation of gene expression, epigeneticInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074620802.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074620802.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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