Gene detail

Detailed information of XP_074620835.1 in Acropora palmata

Genomic Location: NC_133885.1:5571007...5587269
NR annotation: XP_044176399.1, 97 kDa heat shock protein-like isoform X1 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074620835.1

ATGTCTGTTGTGGGATTTGATGTTGGTAACGAGTCTTGTTTCATTGCCGTTGCACGCGGTGGAGGCATTGAGACTATTGCAAACGAGTACAGCGATAGACGAACTCCGAGTGTGGTATCACTTGGAGAAAGATCCAGGGGAATTGGAACGGACGGAAAAAATCAGATGATATTTAACTTGAAAAATACTGTGAGTCAATTCAAGAGACTTATTGGAAGAAAATTCAGTGATCCAATTGTTGCTGAAGAAAGAAAGCGACAAACTTGTCTATTGGTGGAACAACCAGGAAACTCCATTGGCGTTAAGGTTCGTTATTTGGGAAAGGAGGAAGTATTTTCCCCAGAACAGATTATGGGGATGCTAATGACAAAGTTAAAAGTTATCTCAGAGGCTGAATTATCTACAAAAGTGACTGACTGTGTTGTTTCAGTTCCCAGTTACTACGCTGAGAGGCAAAGAAGAGCTATGTTGGATGCTGTAGCGATGGCAGGACTGAATTGTCTCAGATTAATGAATGACACAACAGCAGTTGCTTTGGCATACGGTATTTACAAACAAGATCTTCCAACTGAGAAGCCAAGGATTGTAGTCTTTGTTGACATGGGTCACTCTTCTCTGCAAGTCTCTGCCTGTGCCTTTGTGAAAGGTCAACTCAAGGTCCTAGCCACTGTAGCTGATCCGAATCTTGGTGGGAGGAATTTTGATGAAGTTTTAAAGGATCATTTTACCGAAGAGATTAAGCAAAGGTACAAGTTGGATGTTGCATCGAATGTGAAAGCTGGGATTCGTCTCATCCGTGAATGTGAGAAGTTAAAGAAGTTGATGAGTGCTAATTCGCAGGATATTCCATTGAACATTGAGTGTCTGATGGAAGACAGAGATGTCACTGGAAAAATGAAAAGAAGTGATTTTGAAGAAAAAATACAAAGTCTATTGCAGCGAGTTGAATCAACCTTACAGTCTTTGATTCAGAAATCAGGTCTGAAGGTTTCTGATGTAGAAGCTGTTGAAATAGTTGGAGGTTCGACTCGTGTTCCTATTGTGAAAGACATCATAAAGAAGATATTTGACAAAGAAATCAGCACAACCTTGAATGCTGACGAAGCGGTGGCTAGGGGCTGTGCCCTGCAATGTGCCATTTTATCGCCAACGTTTCGAGTGCGAGAATTTTCTGTCACTGATGCAGCACCGTACCCCATTTGTCTGACATGGAAGTCACAGTCAGATGATGAGGGGGAGATGGAGGTTTTTGCTGTTAACCACGCTTTCCCTTTCTCAAAGATGCTGACATTTTATCGCAAAGAACCGTTTACTTTAGAAGCAAGCTATGGTAAAAATGTCAAATTGCCCCTCGAAGATGGCTTCGTAGGGAGTTATTCAGTACAAGATGTGACACCAACCAAGGAGGATGAATCTTCAAAGGTGAAAGTCAAAGTGCGCTTGGATATTCATGGTCTGTTTACCGTTGTCAATGCAAGCATGGTTGAAAAAATGGGAACTGCAACTGATATTGAACAAGATAAAATGGAAGTGGAAGGACAGGAAGACAAGGCAACAGAAGCTGAGGCTGCGGCTGCGGCTGAGAGTACCACCGAAGAATCAAAGGGAACTGGTGACGAACCCATGGAGACCTCCACTGAGCAGAATACAGACTCCAGTGAACAGAAAGGTGATGCTGCAAAGGAAAAGGAAGCTGAAACCGCCGAAAACGGCAAGGAAACTAAAGGGAAGAAGGATAATGGCGCACCTGCCAAGAAGAAGAAACAGCAAGTGAAAACAATTGAGCTAAGAATCGATTCGACGGCACCTGGACTAACATCAGCTCAACTACGGGAAAAGGTTGACAGAGAGAATCAAATGATATTGCAAGACCGCAAGGAGCGCGAAAAAGGAATTGCCAAAAATGCTGTGGAAGCCTATGTGTATGAAATGAGAGGAAAATTGTGCTCACAATTGGAAAAGTTTATAACAGAGGAGGCCAGAGCGACATTTGTCTCTGAACTGGAGCAAACAGAAGACTGGCTGTATGAAGAGGGCGATGACCAATCTAAAAAAGTCTACCAGGAGAAACTTGACGCATTGAAGAAAACAGGCGATCCAGTTGTCACCAGATTTCAAGAATCCTCGACGAGACCAGCCGCATTTGAGGAACTTGGGAGAAGCCTCCAGCAGATAAGAAAAGTCCTTGAGCTCTGTGCACAAAAGGACGAGAAGTACGACCACATTGAGGAAGAAGAAGTCGCCAAGGCGGAGAAAACTGTGATCGAGAAAGAGAATTGGCTAAACAATAAGTGTAATGCACAAAACCAGCTGGCTGCTCATGAAGACCCGGTAGTCTACACTTCAATGATTAATTCGGAAAGGAAGTTCTTAGAGGACACTTGCTATGCCATCTTGAACAAGCCCAAACCCAAACCCAAACAGGAGCCGCCACCAAAAGAAGAAGAAAAAAAACGGGATGACAAAGCCACGGAAGGCGATAAAGGAGAAGAAAAGAGAGACCAAGAGACTGCGGCAGCAAGTGCTGGCGCCGAACCCGCTCAAGCGGAACAAAGCGCCACAGAAGAGGGAAAGAATCTCGACGAAGGCATGGACATTGATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q94738	97 kDa heat shock protein OS=Mesocentrotus franciscanus OX=1328066 GN=HSP110 PE=2 SV=1
Q06068	97 kDa heat shock protein OS=Strongylocentrotus purpuratus OX=7668 PE=1 SV=2
Q92598	Heat shock protein 105 kDa OS=Homo sapiens OX=9606 GN=HSPH1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004856 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR050451 all species →	Family	Heat Shock Protein 70 (HSP70)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45639 all species →	HSC70CB, ISOFORM G-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09485	HSP110; heat shock protein 110kDa	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.