Detailed information of XP_074620977.1 in Acropora palmata

Genomic Location: NC_133885.1:7769814...7804986
NR annotation: XP_044176911.1, TPR and ankyrin repeat-containing protein 1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BV79TPR and ankyrin repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Trank1 PE=2 SV=3
O15050TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=TRANK1 PE=1 SV=4
Q96AY4Tetratricopeptide repeat protein 28 OS=Homo sapiens OX=9606 GN=TTC28 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000890 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10579
all species →
Rapsyn_NRapsyn N-terminal myristoylation and linker regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR036770
all species →
Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110
all species →
RepeatAnkyrin repeatInterproscan
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR019568
all species →
DomainRapsyn, myristoylation/linker region, N-terminalInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR039904
all species →
FamilyTPR and ankyrin repeat-containing protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21529
all species →
MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0007268
all species →
Biological Processchemical synaptic transmissionInterproscan
GO:0033130
all species →
Molecular Functionacetylcholine receptor bindingInterproscan
GO:0043495
all species →
Molecular Functionprotein-membrane adaptor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074620977.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074620977.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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