Gene detail

Detailed information of XP_074621180.1 in Acropora palmata

Genomic Location: NC_133885.1:16619197...16633867
NR annotation: XP_029206722.2, NACHT domain- and WD repeat-containing protein 1-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074621180.1

ATGCACCCAAATGAAGCCGCAGATGTTAACCAGGACAGAAAATCGTTGCCAGAGGACACCAGGGAACAAGACAGCGAAAGCAATAAGAGCTCGATTGAACGAAATGAGGACGACGAGGATAAACTGGACGACAGTTCTGAGGATGAAGACAAGAAAAAAAGCGATTCTGAAAAAGAGGAGAGTGGCAATGATGATTATGAAGCCGAGAAGGAAAGCAAGCGCAGTTCCACATCAGCGAGTAGAAAAAGCAGCAGCTCGTCAGAAGAAGACGAAGTTAATCGAAAACAAGACGAGAAAACTGACGAAAATAAGCCTCCTTCTGATGATATCGTAGCTGAAGTTGCAGATAACTTGACTTATGAGGAGAAAGTGAAGAAGGCTTTCGTGGGAGATTTGGATTTCAATTATCCTGAAAAAGTTAAAATTGTTCGGATCTTTACCAGCTCCACATTTACAGACACTTCTGTGGAACGCAACACCCTGATGGAGCGTGTGTACCCTCGTCTGAAATCCTACTGCCAAGAGAGAGGATACGATTTTCAAGTAGTGGACATGAGATGGGGAGTACGGGACGAGTCCACTGATGATCACATGACCACTGAGCTATGCATGAGGGAGTTACGCGCATGTCAGAAGTTGTCTACGGGACCCAACTTCATTACCTTCTTGGGCCAAAAATATGGCTATCGGCCTTTTCCGACCAAGATCACTGCCATCCAGTTTGAGGGTCTCCTGGCAACTGTTGACAACAATGACGACCATGAACTGTTGACAAAATGGTTTTGGAAAGATGACAACGCGGTACCCCCTCAATATTTGCTCCAGCCAATCACATCCCAGCTACCTGGATATCGAGATTATGAACATCAAGAGGAAAGAAAGAAGGCGTCTGCTGATTGGTGGACTGCCTTTGAAAGAATGCAGGTGGTTTTAAGGATGGCTGCTGAGAAAGCTTTGGAAAATGAGAGCGATCGGCACAAGTACTACATGTCAGTCACAGAGGATGAAATCCGAAGAGGCATAATAGATTCCATCGACCAGGAGAAGCACTGCTTCTGGTTCAAAAGAGTGATCACGGACATAAATGAAAACATTGACGACTCCAACACTGGAAAATTTGTTGACAAAACCTGGGGAAGTCCATCCTGCGTGGATGATCCCGCTCAGCAGCTGCTAAACAAGCTCAAAGAAGAGGACCTTCCCAGCGCGTTGCCAAGAAACAGTATAATCCAGTACGACGTAAAGTGGCATCAAAACGGAATCAACCCAGGAGAATCTTTAGAGCATGCGCAGTACATTGAAAAACTTTGCACTGACTTTTATGCCGCGTTAACAGAGAAGATAAACCAAGGTATTAGCGAAAATCAATTGAACCTCAAAGAAGATGCTTTAACAGACGAGATATTCCAACATGGATCATTCTGCAGAAAGAAGTGGGAGTTATTTCATGGACGTGACCAATATTTGACAACAGTTAAAGAAAAATTGGAAAAGGATCAAGTTGTTGTGCTGTTTGGAGAATCTGGTTGTGGAAAGACCTCTCTAATGGCTAAGATCGCGATGGAAGTGAAAAAATGGCTGGGAAAACAAACTGCCACCCTCGTTGTAAGGTTCATCGGTACAACACCAGATTCATCAAATGTGCGTTCACTGATGCGAAGTATTTGCGAGCAAATTGTCAAAGCAAATCCGTCAAGGAATTCAGAAGAGAAAAAAGTACCGCAGGACCTTCGGTCCTTGTTGGAGTTTTTTCCAAATTGTTTGGAGGAGCACGCATCGTCGTCCAAACCTTTGGTTCTTGTTCTTGACTCATTGGATCAACTATCAGATGATGACGCAGGAAGAGAATTAGATTGGCTACCAAAGCAGCTTCCAGACGACGTGCACATTGTCTTGTCGGCACTCCCCGGAGACGAATACGTTTGCCTACCAAAACTGCAGGAAAAGTTCGATGAAGCTGACTTAATTGAAGTTCCTCAGATGCCTTTTGATACCGCAAAGCAAATCTTGGACAGTTGGTTGAAATCCTCAAAAAGGAAACTACAAAGTGAACAAGAAAAAGTTGTTTTAGAATCCTTCAAGAAGTGTCCATTACCTTTGTATCTGAAATTATCTTTCGATGAGGCCTGCCGTTGGAAATCGTACACGTCACCTGAGGAGACGCGATTGGCTCCAACAATAAAGGCGATCATCCATGGACTTTTTGAAAGAGTGGAGCGACTTCATGGCAAAGTCCTTGTCAGCCAAGCTTTAGCCTACGTCACTGCTTCCAAGAATGGCTTAACAGAAACCGAGCTAGAGGACATCCTGTCATTGGACGACGCAGTGCTTAATGACGTCTACCAGTATTGGACACCTCCAATTCGACGATTGCCACCCCTCTTATGGATCCGTATACGCTCTGACATTGGAGATTATCTCATTGATAGAGGTGCAGATGGCGCACGAGTAATATACTGGTATCATCGACAGTTCATTGAAGTTGCACGGGAGCGTTACCTTGGAGCCAAACAAGCCGCTGCCATTCACTTAAATATCAGTGATTATTTCCTTGGCAAATGGTCTGACGGTGTGAGGAAGCCTTACATAGACAAAAACGGCCGGCAAATGACCATGGATCGTTTGGTGCCGAAGCAGCCACTTGTATTCGAAGCGAGTGACAGCAAACCCATCTTTAATCTGCGTAAGCTAAGTGAACTTCCACATCACCTGTTGCAGTCCAATCAACTTCCAGTTTATAAGCAAGAAACCATGTTCAACTTCGAATTTCTTTTGGCAAAGGTTCAAGCAATGTCCGTGGAATCACTTCAGCAAGACCTCAGCGCTGCAATGTCTATTTATCCCGATGACAAAGAATTTGAACTCCTTAGTAAGTGTCTGGGTCTCTCGGCGTTTTCACTCCGAGAAGATCCTCGCCAGCTTCCAATTCAACTCATTGGACGCTTGAACAAGTACACCAAGAAAGACGAATATCCCTTCTTGAAGAAAGTCTTGGAAAATGCGAGTACACCCTCTGTCCCTGCCTTTATTCCAAGTCAACAATGCCTCACACCTGTCGGTGGTTCTCTCATCAATTCAATTTCTTATGAAGAGTTTCACGGAGGAATCGAGTACGTGAATTTCACAAGTGATGCTAGTACAATCGTGACTTGTAATCGCGGCTCCGAAGGGCTGTGTTTGCTGTTCATAGATATAAAAAGTGGAAGACGGAAAAGAAAAGTTTGTTTTGATGAATCATCTACAGATGTCAATTCATGTTGGTGCGCAAAGATCAGCTCTCACAATGACGATATATTCTTGGCATCGGGCTCTTCAGCCAACATGTATCTCATCAACGCGAAAACCAACAAAATCCTTCAGGAGTATCATCCGATGAAAGGCAAAGGAAACTGGTTCCGAGGATTCCCATCCGTTGCATTTGCAAGTGAAGATGAGCTGCTAGTTGCCCTTGGAGACGCAAGTGTGCAAATCTGGGAGACTGAGACTGGCAAGCTTTTGTACAACATACCAGTTGGTGATGTCAATGTTGAGGAAGAATTTGGGTCTTTAGATGCAAAAGGAAACATGGCGGTCTACTGCGTTCGTAACAAGAAAACTGTCCATGTTGTTGATGTCAAAACAGGGAAAGAAATTCGTAAGATAGACATAGAAGTGGCCAAGGAAGAAGTCATGGGACAATGGCAGGAAAGGTATATAAGAGAAATCCACTTGACCAGCAAATTCCAGCTAATTGTAGTAATAGAGGGAACACTGAAGTCAGGGGTGAAGGTGTACAATCCTGCAACTGGTCAGCACATCTCGGACATTCCAGACTTTGGAATCGCACAACACAGTCGCCTTGTGGTCACTGAGGATGGAAAAGCAGTGATCGCCATCAGAAACAATTATGAACTAGTGCGATGGGATCTGGACACTGGTAACGCCATTGTGGTTGCTAGGTTACAGTCAGGCTTTGGAACCTTTGGCCGTAGAGGCGATTTCATAGCGACAGCAGGCTCCGATGGAATCCTCAGAATTTACGATGCTCGGGAGGCCGTTGATGAAGATGAAACAGATGTCACTGCTGTCACTGATGGTTTTGCTGATTCGATATGGTCGCTGACAGCTGCAGCGGACAATCGACACGTGATTGCAAGCTGTACAGTTAAAATGATGCCCGAGATTGCCGTATGGGATGCACTGGCGGGGGTAAAAGTCCGTTCCTTAAAAGCCTTCAATTTCCCTCAGCCATTGCGCATGCTTAACGACAAGGTTGGTGTCGGTCGAATAGCTGTTGGGCCGCAAGAACAAGGAAACTTTGACCACTTCAAAGTCATGGACTTTGACCAAGCAGAAACGCTACGTGTGATGCAAGGGAAGTCCAGCAAGAGGATGGAGGCAGTTGGCTTCATTGATGACAAAAGAATGATTGGCTTGTCACGCGGTAGACGAAACTTGAAGGTGTGGGACGTGGAGACTGGAAAGGTTGTGGAACAACATAAGATGGGCCAGAAATATCGCTTAGAAGGAATTATCATCAGTCAAGATGGCAGTACGGTGATATGCTCTCAGGCCAGCTTTTACGTAGAACAAGACGAATCCACGGTCCCACTGATTGCCTTTTACACTAAGACGCTCCAAAACAACCAGCTAGAGCCAGTCCAGGACGAGCAGTTAAGTTTGGATGGTGGAGCAGCCATTACAGAAGATGGCAAATATTTCCTCGCGCAGCTGAAAAATGAGACGAAAACAGTGTTGTGGGACACAGAATCTGGGCACATCATGCATGTCTTAGATGATGCTAACGGCAGAGGAATGGTTGCAATCTCGTCAAAGAGCATGCGCGCGGTGACAGGGCAATCGGCCGAAGCTGATGGCATGAAAGTTTGGGATGTACAAAGTGGTAATCTGCTTCACAACTTTGTCGGTTCAGAAATCTCCAAAATATTCCTTACTCAAGAGGGCACCATTGCAATAACCACAGATTCCAAAGGGTACCAACCTACATGTTTTGAGGCCTGGGATTTAATGAAAGGCAAGAAGCTGGCTTCGTTCACAGTGGACACAAATCCATCTTGGATCTGTCACATGGGTGACCACATTGCCTACACAGTGCAAGCCAGTGTGACTGTCACAACGCTAGAGCTTCGTGTCCCTGGAAACGAGAAGACCAAGCTTAGTCCTTCTTCGTATGGTGCCCACAAAGAACTAACTGAATTCAAGGGAATGTTGGACCCTTGCGATCCTAACGACAACGATGAAGACCAAGATGATGATGAGTCGGATATAATGCAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6H603	NACHT domain- and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Nwd1 PE=2 SV=2
Q149M9	NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=NWD1 PE=1 SV=3
Q9ULI1	NACHT and WD repeat domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NWD2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000365 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13271 all species →	DUF4062	Domain of unknown function (DUF4062)	Family	Interproscan
PF13360 all species →	PQQ_2	PQQ-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR052752 all species →	Family	NACHT and WD repeat domain-containing protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025139 all species →	Domain	Domain of unknown function DUF4062	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19871 all species →	BETA TRANSDUCIN-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24734	NWD; NACHT domain- and WD repeat-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.