Gene detail

Detailed information of XP_074621259.1 in Acropora palmata

Genomic Location: NC_133885.1:21938611...21951028
NR annotation: XP_029203707.2, CWF19-like protein 2 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074621259.1

ATGTTCACATACACCACGTACCTATCAAAATTTAAGATGGCGGACCTAATCAACTTTGTTTCCAAAAGAGAAATCGACGCCAAAAAAGAACAGCGAAGAAGAGGAAGGCAGGAGATATTGAGAAAGGCAAAGGAAGACTATGAGAGGAAGCAAAGGGAAAAAGAACTAAGGAAAGAATCTGGGGAAACGACATGGATGTTACCAGCACTGAGCAAGAGGTTATCAGAAGAAACCGAGAGTCGCGAAAAGAGGAAAAAACACAAGAAGGACAAGAAACAAAAAAAGAGCAACAAAGAGAAAAAGCGTAGGAAGCACAGAAAGGATGACCAAGGAGGATCTCCCAGCTCTTCCCAGTCTGAATCAGAGGATGAGTGGATTGAAAGAGGAAGCGAATCAAAGAAATCAAGTGCAGAGATTTCACCAAACCTTAAACAGGCTCAGGAGCGTGAGAGCTGGATGCTTTGTCCTCCAATCACATCAAGCTCTGAATCTCAGCTACCAATGAAAGTTGATGAAGAAGAAAACAAGGATAATGTGGAGGAAGAAGAGAGGTTTAAAGCTCTGTCATGCATTGATAGGCCTGGACAACATCCAAAAGAATTAAACCCATACTGGAGAGATGGAGGAACAGGTTTACCATCCCAACTGGAGGATGCACAGGATACCACTATAGCAGAAGGTAGTTCAAAGAGTTCATATAGCTGCAATTGGCTGAAAAAAGCTTATCAGAGGGCCAAGGAACATGCACAAGAAGAAGGGAGGAGTTTAGAAGAGATTGTTGCCCAACGATATGGGTCTCTTGAGAAACTTGAATCAATGATAAAGGAAGCCGAACAGAGGGAAAGAGGTTATCGCTCGGTGAGATCGAGAATTAATGAAGGGCATCGGAGTGACTATGGAAACCGAGGCAAAAATGATATAAGAAAGAGATCAAGAAGCCCAGACAGACATGCTAGACACAGAAGGGAGAGACATGATGAAAGCGCACACAATTCTGCAAGAGATGCAAGTGATAGCTGGAGAAGAAGAACACCCGAGAGAGAGGAGGAAGAAGGAGAACGGAAAAGAAATTATCCACCGACGTTTTTACGACCAGATGACAGCTATGGTTCCTCCTTAGCGGGCAAATTTAAGTGCCCAACGACCACGTCACAGATTTCATCTCCGTCGACGTGGGACTTTGACTGTAAACAAGAGCCCAGTTTCCCCAGGGACAGAACAATGTCCAGACCCTCTGGTAGATGGAAAAAGAAGCCAGAAACAGGACCCGAGAAAAACACCTCGTCCGAGGTAGTCGATAAAAAGATGGAGGAACTTGTTCAGGACAGAAGGGAAGTTTCCGAGTCGGAAAGCAGCTCGAACTCAGAGACAGAAGAGAAGGAAAAGAAGGAGAGCATTGCAATTCCAGCCAAGAAGATCACCGAGGCTGATCTGAATGAAATTGGAGCTAAGATTGTCAAGTCAGAGATAATGGGCAATGAGGACTTGGCCGCCAAGTTGAAGTCAAAATTGGATGAAATGAGAAGAACCAAAGAGCTTCAAGAATCCCAAGCGAGAGAGAGCGGACCGACAAATAAACGCACAGAGGAAACCGTAGTACTAACAAGAACAGATGCAGCCGGTAATGTGAGACCGCTGGAGGTGACAACAGAACGTGAACACGTGAAAGGACGAAAGAAACGACAAAAGGTTGAAACACATAACAAGGAAGGCAAGAGGGAGTGGTACTTTGCCGACGATGATAGGTACGATTTAAAAGAAATGGTGAGACGAGAGAAGATGCAGACTGCCGAGGATAACAATGCTATGATGGCCCGACTTTCATCCAAGGCGGCTAGAATGGTAAGTTCAGACGACTTCTCTCTGGATGATCACTTTGTATCTTCAGCGGCGAATAAAATCTCCCCGGCTCAACTTGAAGAACGAGAAAGACAAAAAGCAATAAAAGAACACAGGATATTAGCCGCTCAGCTATCCAAATGTCACTTCTGCTTCGAGAACCCAGATATCGCCAAGCATCTTATAATAGCCATTGGCCTCAAGGTTTACCTGGCGGTCCCGCTACACGAATCAATGACAGATGGTCATTGTCTGATTGTCCCTATGCAGCACTGTTCAGCATCTACGCTGCTGGACGAAGACGTATGGAGTGAAATCAAGATTTATAAAAAAGGACTTACTAAAATGTTTGGAGAAATGGAGCAGGATGTTGTTTTTCTGGAAACTTGCAAGCAGCTCAAGAAACAACGTCACATGATCATAGAATGTGTACCGCTGCCCAAAGAGGTCGGGGACATGTCTCCCATTTACTTCAAGAAAGCTATTCTGGAATCAGATACCGAGTGGGCGCAAAACAAGAAGTTGATCGATACCAGAAAGAAAGGACTGCGTGCATCGGTCCCTAAAGGTCTACCATACTTCAGCGTCGAGTTTGGTCTGGACGGTGGCTTTGCGCATGTCATCGAGGAAGAGGAACTGTTCCCGCATTACTTCGGCAAGGAAATATTGGGAGGAATGTTGGACCTTGAGCCGCAGCGATGGAGGAAACCGCGCAAAGAAAATTTCGAAGAACATAAGAAGAAAGTGTTACGATTTGGCGAGTGGTGGGAACCGTTTGACTGGACAAAGAAAATCGACAGAACGAACAGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28C44	CWF19-like protein 2 OS=Xenopus tropicalis OX=8364 GN=cwf19l2 PE=2 SV=1
Q2TBE0	CWF19-like protein 2 OS=Homo sapiens OX=9606 GN=CWF19L2 PE=1 SV=4
Q8BG79	CWF19-like protein 2 OS=Mus musculus OX=10090 GN=Cwf19l2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004123 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04676 all species →	CwfJ_C_2	Protein similar to CwfJ C-terminus 2	Family	Interproscan
PF04677 all species →	CwfJ_C_1	Protein similar to CwfJ C-terminus 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006767 all species →	Domain	Cwf19-like protein, C-terminal domain-2	Interproscan
IPR040194 all species →	Family	Cwf19-like protein	Interproscan
IPR006768 all species →	Domain	Cwf19-like, C-terminal domain-1	Interproscan
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12072 all species →	CWF19, CELL CYCLE CONTROL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24940	CWF19L2; CWF19-like protein 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074621259.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

63TPM > 0

2Conditions

21.8Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	33	7.56	17.62
all_coral_tissue · baseline	38	30	11.32	21.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.62
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.34
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.87
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.77
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.89
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.79
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.57
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.57
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.54
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.36
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.16
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.75
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.81
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.62
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.56
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.14
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.04
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.61
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.56
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.86
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.75
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.45
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.42
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.14
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.98
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.49
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.39
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.19
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.13
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.01
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.57
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.54
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.47
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.83
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.85
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.63
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.28
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.94
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.91
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.90
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.75
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.21
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.08
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.66
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.56
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.31
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.29
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.06
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.79
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.76
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.39
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.03
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.35
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.20
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.78
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.66
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.57
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.23
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.50
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.15
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.46
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.68
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.39
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.