Gene detail

Detailed information of XP_074621260.1 in Acropora palmata

Genomic Location: NC_133885.1:21869886...21888400
NR annotation: XP_029203749.2, hyaluronan-mediated motility receptor-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074621260.1

ATGTTTCTTAAATCGAAAAGATTTCATGACAAAGTTCCTCAGGCACCTCCTGTTGGTTTGTATGATGTCCTTCATGAAAAACAGGGACCTGGGGCTGGATTTGGTAAAGGCAAGCGCTTTGCAGATTTAAAAGACGCAGGGCCTGGGTTCGGATCAAACAGTAGTTTGCTTGATATCAGCTGTTGTAGTACATCAAGCAAGAATGACAGCAAATGCTCTCAATTTGCCACCCCTCTTCCTCTACGAAAGTGCAGGAAGGTATCTTCTTCAACACCAAATCCCAAGGGCGATCCAGCCCCAGAAAGCGAGACCTTCAAGCTGCTATCTGAGAGACAAGAGCTTGAAAACAGACTTTGTGCAATGCAAATGGAGATTGAAGATCTGGAAAAGCGTGTTCAGTCATTGTTACAAGAAAAAACTGGCCTTGAGTCAGATGTTACTTGCCTTAAGAAAGAAGTACAAGATCTGAAAGAGGAAAGGGATGTGCTGCTGGCAAAAGTACAAGAAAATTCAAACACAACAAGTGACATTGTTAGACTAGAAGAGGAAATCAAAATGGCTAAGTTACATCTACAAGACAAGGAAGGACTGATTTCCTCTCTCAAACTGCAACTTAGCTGTGCAGCTGGAAATGCTAAAGCTGATCTTGAGTTGGAAATGGAGAAAAACAAGGCCTTTAGTGCAAGAATAACTTCCTTAGAAAATGCGGTGGCCGATGTTTCGATAGACAGAGATGATGTGGAAGAGGCGAATCGAAAGCTTCATGAATTGGTGTCACAACTGCGCAATGAGAATATCCAACTGAGAGCAAAACTTGAAGAAACCGAGATGCAATTAGAGGATATCCGAGTAAAATTGGCAAGAACTTTAACAGAAAGCGAGAGCAAGATTCACTTGCTGGAAGAGATGTTAAACAAGGAAATTATGAGAGGTCGAGAATATGGTGAAAAACTGGAAATTTCTTTAAAAAGCAGCGCTGAGAATTTTCAAGAAGCTCAATCTAGGATTTCGCAGCTTCAAGAGACCAATGAAAATTTGAAAAACAATAACCACGACTTAGAAGTGAAAGTAATGGAAATGATTGAAAGAGAGCAACGGTCAGAAGAAAAAGAAAGGTCTTTATCAGCAGAGAATCTATCGTTGCAAAGCAGACTTGAAAAGTGTGAAAACGATTATCAACAGCGGCTGTCTATTGCCAACGATCAGGTGGAAACTTTACAGCAAGATCTTCAAAGGAGTGAGGAGATGATGACACAGAATTTGAGATCACTTACAGAAAAATATCGCAATCTGGAGGATTCCTTTGCGGATTTTCGTTCCGAGGCGGAGAAAGAGAAAGATTTGATTTCAGCAGAGTTAGAGGTCACGAAAGATTCTCTCCAGAAAAGCCAACAGGAAAGCGAACAACAGAAAAACACTTGCGTTTTTCTCAAACGACAAAGCGAAGAAATACAAAAAGAATCCGAGCAACTAAATGGTCAAGTTGAGAATTTAAAGACTGAAGCAGAATCGCTGCGTTGTGAACTCTTAAAACGACAAGAGGAAGTGGCTTCGGCAAAGACCGAAGGCAAAGCTGCTTTGGAAGAACTAGAAAAACATCTGGAGACCGAAAACTCAACGAACAGTGCTCTTAGGAAGGCCTTGGAGGAGGCACACGACACTATCAGTGATCTCCATCAAAGGGAGGAAAGATTGTCTGAGGAATTACAGAGTGTGATGAGCACCCATAAAAAGCAAGAACAGGAAGTGGAAGCTGTTAAGGACGAATTAGCCAGGGCAAAGTTCAAGGTGACAGAAACTGAGGAAAATTTAAAACACGAAGTGAACAGACACCAGGAAGAAGTTAGTGAATTGGAAGAACAACTGAGGACGACTGAAGCGAACTTCTCTGGGCAACTAAAGGCATTTGAAGAGAAAGGTGCGAAGTCTAAAGAGGAGTTTGGAAGGCGCCTTGTAGAGACTCAAAAGAAGCTTTCACAAACGGAAATAAATTTTGAGAAATTCAAGAGCGAACAAGAAATGAAAATAAACGACACCAACAAGGAAATGCAAACGAAACTTTTCGCTGCCGAGGAAGAAGTCCACAGCTTAAAATCGGAGTTAACAAGTAAACGCAACAATGAAGATTTACTAAACGAATACATGGCTCAAATCGAGATGTGGAAGACAAAATACGAAGATCTTTGGATTAAGATTGAGCCGTTCAAGGACCAGTTAGATGAATACGAAGCTGAAAGAAGGGCCCTTCTTTGTCAAAACAGTCGAGCTAAAGAGGAGGTTGCCAAACTGGGGCAGCAGTACGCCAAATTGCTGGGTCACCAGAACAAAAAGCAGAAGATTCACCATGTCATTAAGCTCAAAGAGGAAAATTTGGCTCTAAAGGACGAAAAGATGAAACTTCGAGAGACACTCGACAAACAAAAGAGGGCAATGAAGAAGTTAGAAGATAAAGTTGACCAGTTGACGGGGAAAAAGAGATTCAACCCTGCTGAGGCTTTCACGCACACGAAGGAGAACACGCCATTAGCAGTTATATCGAATGGAAACGCGTCGGTCAGGTTGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75330	Hyaluronan mediated motility receptor OS=Homo sapiens OX=9606 GN=HMMR PE=1 SV=2
Q00547	Hyaluronan mediated motility receptor OS=Mus musculus OX=10090 GN=Hmmr PE=1 SV=4
P97779	Hyaluronan-mediated motility receptor OS=Rattus norvegicus OX=10116 GN=Hmmr PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004159 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15908 all species →	HMMR_C	Hyaluronan mediated motility receptor C-terminal	Coiled-coil	Interproscan
PF15905 all species →	HMMR_N	Hyaluronan mediated motility receptor N-terminal	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026203 all species →	Family	Intracellular hyaluronic acid binding protein	Interproscan
IPR031794 all species →	Domain	Hyaluronan-mediated motility receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18956 all species →	HYALURONAN MEDIATED MOTILITY RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005540 all species →	Molecular Function	hyaluronic acid binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06267	HMMR, RHAMM, CD168; hyaluronan-mediated motility receptor	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074621260.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

56TPM > 0

2Conditions

23.1Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	31	5.27	14.34
all_coral_tissue · baseline	38	25	7.51	23.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.34
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.07
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.95
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.95
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.66
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.07
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.06
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.85
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.59
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.37
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.62
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.21
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.02
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.48
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.12
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.06
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.73
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.93
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.92
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.90
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.13
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.72
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.57
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.96
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.86
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.42
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.40
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.03
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.58
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.73
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.05
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.11
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.58
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.33
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.16
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.94
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.91
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.59
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.44
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.34
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.26
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.95
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.90
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.78
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.76
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.58
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.07
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.51
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.21
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.10
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.47
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.25
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.86
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.85
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.81
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.64
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.