Gene detail

Detailed information of XP_074621265.1 in Acropora palmata

Genomic Location: NC_133882.1:25079417...25106912
NR annotation: XP_044178533.1, LOW QUALITY PROTEIN: spectrin alpha chain, non-erythrocytic 1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074621265.1

ATGACAGACGTCGAGGTTCGTCAGATAGCTGTCTTAGAAACTGTCGAAGACATCCAAAATCGCCGTGATGAAGTTTTACGGCGTTACGCGGAGTTCAAGGAAGCTACACGAAAGCGACGCCAGCGCTTGGAAGACGCAAAATGCTATCACCAGTTTAAGCGAGATGCCGACGAAGTGGAAGCATGGATTAACGAGAAACTTCAGATCGCCTGCGATGAGAATTATAAAGATCCGACAAACCTCCAGGGTAAACTTCAAAAACATCAGGCATTTGAGGCTGAGATCTCAGCTCATAGCCTCTCCATGGTGGAGCTTCAGGAAACAGGGGAAGGAATGATAAATGAGAGTCATTATGCTTCAGACCTCATTAGGGAACGTCTTGACTCTTTGAAAAAGCTATGGGAGCTGTTGTTATCCAAGTCAGCAGAGAAAGGTCGCATGCTTCTCTTTACCCAAAAGAGGGTTCACTTCCTGCATGAAACTGAAGAAGTCATGTCCTGGATTCTGGAGAAGGCAACAATTGCCACTTCAGAGGAATTGGGAAGAGACTTAGAACATGTTGAAGTACTGCAGAAGAAATTTGAGGATTTCATGAAGGATCTTCAAGCAAATGAATCCCGAGTAACTTATGTCAATGATCTTGCTCATCAGCTTGGTGATGAAGGTCATCCAGACATTGAGTTAATCACTGCCAAGCAAACAGAAGTGAATGAGGCTTGGGAAAGATTGAAAATGCTGGCAATAACGCGTCAAAAACGACTAGCTGGAGCACAGCAGATTCACAGCTTTTATCGTGACGCTGATGAGACGAAGAATTGGATAAATGAGAAGGACAAAGTGCTGTCTTCAGATGATTATGGAAAAGATCTTGCAAGTGTTAATGCGCTTTTGCGAAAACACGAAGCTTTGGAGAGAGACTTGGCAGCTGTAGAAGACAAGGTAACAGCTCTCAATCAAGAATCGGCTCTGCTTCAAGAAGCTTACCCGGAAAGTGCTGATGATATTTCTGCCAAAGAAGATGAGATTGTGAATGCCTGGGGAAACTTAAAGGAGAAGTCTGCAGTGAGAAAGACAAGATTGGAAGACTCTTATCGTCTTCAAAGATTCATCAGTGATTACAGGGACCATATCTCATTCATAAATGAAATGAAAGTTTTGATCCAGAGTGATGAACTAGCAAAAGATGTTGCAAGTGCTGAAAGCCTTTTGGAGCGACATCAGGAGCACAAGGGTTACATTGATGCATCAGAGGATGGTTTCAAGAAGTTTGCTGATGATGGTGAAGAACTTCTCAGTTCGAATCATTATGCAAGTGATGAGATCAAAGAAAAGGTTACAAGTTTGGAGTCAGAAAAGATGGATCTGCTGGAGCTATGGGAGAAACGACGTGTCCAATTTGAGCAATGCATGGAGCTTCAGCTTTTTAATCGTGATTGTGAGCATGCCAATGCCTCGATGACTAAACAGGAGGGCTTCCTTGCTGATGACAATTTAGGGGATTCTCTTGATGGAGTGGAAGCATTGATCAGGAAACATGAAGACTTTGACAAGTCCTTTGCAGCACAAGCAGAGAAAGTCAATGGCATTGATGAATATGCCAACCGCCTTATCGACAGCAATCATTATGCTCTGGATGAGGTGCGGGAAAAGAGAGATGGCATTCTGGAAAGGCGTCAGAGTATAGAGGAACTCTCAAAGGCACGCCGGGCAAAGCTTGAGGAGTCTCGCAAGTTACAACAATTTGAGCGAGATGCTGATGAAGTCAAGAGTTGGGTTACTGAGAAATTGAAGATTGCCTGTGATGAGTCCTACAAGGACCCTACTAATCTTCAAGGGAAAAATCAGAAGCACCAAGCATTTGAAGCAGAACTTAATGCCAACCAAAGTCGTCTGGATGCAGTGGATAACACTGGACAACAGTTGATTAATGATAAACATTATGCTTCAGACCAGGTCCAAGAGAGACTTGATGAGTTGCATCAACTGTGGAACCATCTGTTTGATAGGTCAAAGGACAAAGGGATGAAATTGAAGGAAGCTGCTCAGCAACAACAATTCAATCGTGCTACTGAAGATGTGGAACTCTGGTTTGCAGAAGTTGAAAATCTCCTTGCAGTGGAAGACCTTGGGAAGGATCTGACCAGTGTACAGAACCTCCAAAAGAAGCATGCTATGATTGAGGGTGATGTCATTGCACGCGCAGAAAAGATTGAGGTTGTCAATGCCCAGGCCCAACTGTTTGCTGAAGCTGATCATTTTGATGCTCCAACCATTTCAAGCAAGAAAGAAGCATTGAATGCTAGATATCAGCAGCTCCAGGCCCCACTCCAAGCACGCAAAGCCAGACTCGCTGACGCAGAGAAACTGAAGCGATTTCTTCATGATGTTGAGGATGAGGAGGCTTGGATCAGAGAAAAAGAACCAATTGCTTCATCTACCAACACAGGGCGAGATTTGACTGGAGCCCAGAATTTATCAAAGAAACATCAAGCTCTAATGACTGAAATTGCTGGCCATGAACCACGCATCAGAGCTGTGTGTGATAATGGTGTTCAAATGATTGACAATGGGCATTTTGCTGGTGATGAGATTAAGGAGAAAATTGATGAACTTGATCAGAAATGGCATGACTTCAAGGATAAAGCAGCCACAAGGAAGGGGCATCTGGATGATTCTCTCCAAGCCCAACAGTATCTCGCTGATGTTGCTGAAGCAGAGTCTTGGTTGAAGGAGAAAGAACCAATAGTTACTAGTGGTGACTATGGCAAAGATGAGGATAGTGCCCAGGCACTGTTGACCAAACACATTGCCATCATGTCTGACTTGAGAGCTTATGGAACAGTTATTGATGGCCTGCGAGAGCAAAGCCAGCACTGCAAGCCTTTCGCCCATGTAACTGACATCTCAGACAAGGAATGCGTAGTTTCCCTATATGACTACCAAGAAAAGACTGCTAGGGAAGTCTCCATGGAGAAGGGGGATGTTTTGACCCTGTTAAATTCAAGCAACAAGGACTGGTGGAAAGTGGAAACAAATGACAGGCAAGGGTTTGTACCTGCAGCATATGTCAGTAGGATTGACTCACACAAAGCCTCACAAGAACTTCTGACTCAGACTCCCGAGGTGCAATCAGTTGCTCAGCGACAAGAGGCCTTGGATCAAAAGTATGATGACTTGATGAATAAAGGTGAAGAGCGCAAAAAGAAACTGGAGGACTCCATTCAGCAATATTCTCTTCTTCGAGATGCTCATGAGCTGGAGTCTTGGATCAATGACAAGGGAGCCATTGTCACTTCAGAAGAGGTTGGAAAGGATTATGAACATGTGGAAGCACAGAGAAAGAAGTTTGATGACTTTGAGAAGGACATGATTTCCAAAGAGGTTCGCATCAGGGAGCTCACTCTGCATGCAGAAAAGCTCAAAGTTGAACGCTACACAGAATATGAGATGATCCATGAGATGATAGAGCGCTTGGAGCAGAAGTGGGCAAACTTAGTGGCCATGTCTGAACAGAGGAAGGAGAATCTTGACAATGCCCAAGAAATCCAAAAATTCCACAGAGATGCAGATGATACAAAGGCTTGGATATCTGAGAAAGACACGGCACTATCCACATCTGACTATGGCAGAGATTTGGCCAGTGTACAGGCATTGCAGAGAAAGCATGAAGTTCTGGAGCGAGATTTGGCTGCCTTAGAAGAGAAGGTGCGTGAGCTTAATGTGGAAGCAGCCAAGTTGACCTCAAGCCACCCAAGTGCTGCACAAGACATTGAATGGAAGAGACATGAGCTAGAAGAAGCTTGGGCCAACTTGCGAGAACAGGCTGCAGCAAGAAAGGGCAAGCTGAGAGATTCCTATGATTACTTCCACTTCCTCAACGAGTTCAGAGATCTAACTTCATGGATCAATGGTATTATGGCACTTGTGACCTCAGATGAGCTTGCAAAGGATGTCGCCAGTGCAGAAGCTTTGCTTGATAGACATCAGGAACACAGGGCTGAAATTGATGCACGTGACAGCACCTTCCAAAGTTTTGAAGATTTTGGAAAGGATTTACTGGACAAGGAACACTATGCCAGTCCAGACATCCGTGAAAAGCTGGATACAATGGCGGCAGAGAGAGAGGAACTAGAAAGGGCATGGGCATTGCGCAAACAGAGGTTGGATGAATGCTTGGAACTACAGACGTTTAACCGCAATGCCGAGCAACTTGAGCAGTGGATGGCAACCCGTGAAGCCATAATCCAGAGCGAGGATGTTGGGGCAGCTGAAGGTGCTGAAGCTCTCATCAAGAAGCATGAGGACTTCACTAAGACGCTGGCTGTTCAAGATGTGAAGATCAGTGCTTTGAATGATGAAGCTAAGAGGCTGATCGATAATGATCACTATGATTCTCCAGCTATAGCAGAGAGGATTAGCACTGTATTGGCGAGGTGGGCCACGCTGAAAGCTGCACTGGTTGAGCGCCGTTCTAAGTTGGGTGAATCAAAAACTATTCAACAGTTCAGCCGTGATGCTGAAGACATAGAGGCCTGGGTCAGTGAAAAATTGCAGACTGTTCTTGACGAATCATACAAGGACCCAACCAACCTTCAGTCAAAGTTCCAAAAGCACCAAGCTTTTGAAGCTGAAGTTTCCGCCAACCAAGAAAGGGTTTTGGAAACCATCAATCTAGCAGAAGGCCTTATCGAACAGCGGAAGTGCGCAGGAAGCGAGGAGATTGTGAAAGAGAGAATCACCAAACTTCAGCAACAGTGGGAGTACCTCGTACAGAAATCCAACGAAAAAAGCCAACACTTGAAGGAGTCCAACCAGCAACAACAGTTCAATACCAATGTCAAGGAATTAGACTTCTGGCTCGGGGAGGTTGATGCCAGCCTGTCGCATGATGATTTTGGCCGTGACTTGGCAAGTGTGCAGAATCTTATGAAGAAACACCAACTTGTGGAAGCCGACATCACTGCTCACGAGGATCGCATCACAGATCTGCAAGCTCAGACTCAGCACTTCGCTGAAGTTGGCCATTTTGATGCAGATTCTCTGCAAGACAAGTCTCGTGGTATTGCTGAACGCTATGAAAAGGTTAAGGACATGGCCGCCGACCGCCATAAGAAGCTGGATGAGTCTAATGCTCTGCACCAGTTCTACCGAGATCTTGATGATGAGGAGTCCTGGATCAAGGAGAAGAAGTTGTTGACAAGCTCAGAAGACTATGGCAAGGACTTGACTGGAGTGCAGAACCTGCGTAAGAAACATCAGCGCCTGGAAGCTGAGCTAAACAACCACGAAGCGAGGATTCAGGCTGTGCTTTCATGTGGTCAGAAGTTTATTGATGAGGGACACAGCAGCTCTGATGAGATAAAGGCCCGCTGTGATCAACTGCAGGAGAACTGGGACGAGTTGAACAGTCTAGCAAAACAGAGGCAGCACAAGCTGGATGAGTCTCTTGCCTACCAACAGTTCAGTGCAAATGTTGGTGAGGAAGAAGCCTGGATCAACGAAAAGAACACTCTGGTCGGAAGCGATGACTTTGGCGATACTTTGGCCGCTGTACAGGGTCTCTTGAAGAAGCACCAAGCTTTCGAGACTGATTTAGAAGTGCACCGCGAGAGAGTTCAAGATATTGAAAATGATGGAAACCAGCTCATTGAAAAGGAAAATCATCAGGCTGAACTCATTGAACACAAGATTTCATCCATGAAGAACAAATTGTTAGAGTTGGAAAGAATGGCCTCCTATCGAAAAGCCAAACTGAACGATAACTCAGCGTTCTTGCAGTTCAACTGGAAAGCAGATGTGGTAGAGTCATGGATCGGTGACAAAGAAGGAATAGCTCGATCAGATGATCTGGGACGAGATCTGTCATCTGTTCAAACTCTTTTCACGAAACAGGAAACTTTCGACTCGGGACTTCAAGCTTTTGAGAATGAAGGCATTGCACGCGTGACAATTCTTAAGGATGAATTGGTCCAATCACAGCACGAGCAGTCACCAGCCATCATCAAACGCCACGATGACCTTATAAGGAGGTGGGAACAGTTATTGGAAGATTCTAAAACCCGCAAAGAACGTCTACAGCACGCACAGGATCAATACAAAAAGGTGGAGGATCTGTTCTTGTTATTCGCCAAGAAGGCGTCTGCCTTTAACAGTTGGTTTGAGAATGCTGAGGAAGATCTCACTGATCCCGTGCGCTGCAACTCTGTCGAAGAAATTCGCTCCTTGCAAGATGGACACGCAGAGTTCCGTGCCTCCTTGGATCAAGCCGAAGATGACATCATGATGCTACGAAAGCTTGATCGACAAATCAAGAGTTATAACGTGTCTATTAACCCGTACACGTGGTTTACTATGGAAGCTCTTGAGGACACCTGGGAAAATCTGCAGAAGATAATTGAGGAACGCGAAGATGATCTGAGTAAGGAAGCTCAGCGTCAAGAATACAACGACAATTTGAGGCAGGAATTTGCTCAAGCTGCTAATTCCTTCCATGCTTGGCTCTCAGATACGAGAGTGGCAATGGTTGACGGGCAAGGGGACCTGGAGGATCAGCTGGCGGAGGTGAAGAAGAAGAGTGCTGAGATAGCTGACAGGAAAGAGGACCTAAGGATCCTGGAAGACCTCGGGGCTCAGATGGAAGAGGCCCTCATCCTGGACAACAAGTACACTGAACACAGCACCGTGGACCTTGCCCAGCAGTGGGATCAACTGGATCAACTTGCCATGCGCATGAAACACAATCTGGAACAGCAAATCCAGGCCCGCAATACTACTGGTGTGTCCGAGGAAACGCTCAAAGAATTCACCATCATGTTCAAGCACTTCGACAAGGACAAGACAGGTTATTTGGATCATCAAGAGTTCAAGTCATGTCTTCGCTCTCTCGGATATGATTTGTCCATTGTCGAGGAAGGCGAAGAAGATCCTGAGTTTGAGGCTATCCTCCGGACTGTGGATCCCAATGGTGACGGTGTCGTTTCCATGGGAGAGTATATGTCCTTCATGATCAGTCGCGAGACGGAAAATGTCGGTTCTAGTGAGGAAGTCATCAACGCCTTCAAGGCATTGACTGAAGGAGGAAAGCGACTCTATGTCACCGAGGCGGAGCTTTATCAGTCACTCACCAAGGAGCAAGCAGACTTCTGTATCGATCGTATGAATCCGTACGTGGATGACAAGGGCCGAGAAGTGCCTGGAGCCTACGACTACAAAACTTTCTGCGAGAAGTTGTTCTGTTCTAGTTAA

Protein

XP_074621265.1

MTDVEVRQIAVLETVEDIQNRRDEVLRRYAEFKEATRKRRQRLEDAKCYHQFKRDADEVEAWINEKLQIACDENYKDPTNLQGKLQKHQAFEAEISAHSLSMVELQETGEGMINESHYASDLIRERLDSLKKLWELLLSKSAEKGRMLLFTQKRVHFLHETEEVMSWILEKATIATSEELGRDLEHVEVLQKKFEDFMKDLQANESRVTYVNDLAHQLGDEGHPDIELITAKQTEVNEAWERLKMLAITRQKRLAGAQQIHSFYRDADETKNWINEKDKVLSSDDYGKDLASVNALLRKHEALERDLAAVEDKVTALNQESALLQEAYPESADDISAKEDEIVNAWGNLKEKSAVRKTRLEDSYRLQRFISDYRDHISFINEMKVLIQSDELAKDVASAESLLERHQEHKGYIDASEDGFKKFADDGEELLSSNHYASDEIKEKVTSLESEKMDLLELWEKRRVQFEQCMELQLFNRDCEHANASMTKQEGFLADDNLGDSLDGVEALIRKHEDFDKSFAAQAEKVNGIDEYANRLIDSNHYALDEVREKRDGILERRQSIEELSKARRAKLEESRKLQQFERDADEVKSWVTEKLKIACDESYKDPTNLQGKNQKHQAFEAELNANQSRLDAVDNTGQQLINDKHYASDQVQERLDELHQLWNHLFDRSKDKGMKLKEAAQQQQFNRATEDVELWFAEVENLLAVEDLGKDLTSVQNLQKKHAMIEGDVIARAEKIEVVNAQAQLFAEADHFDAPTISSKKEALNARYQQLQAPLQARKARLADAEKLKRFLHDVEDEEAWIREKEPIASSTNTGRDLTGAQNLSKKHQALMTEIAGHEPRIRAVCDNGVQMIDNGHFAGDEIKEKIDELDQKWHDFKDKAATRKGHLDDSLQAQQYLADVAEAESWLKEKEPIVTSGDYGKDEDSAQALLTKHIAIMSDLRAYGTVIDGLREQSQHCKPFAHVTDISDKECVVSLYDYQEKTAREVSMEKGDVLTLLNSSNKDWWKVETNDRQGFVPAAYVSRIDSHKASQELLTQTPEVQSVAQRQEALDQKYDDLMNKGEERKKKLEDSIQQYSLLRDAHELESWINDKGAIVTSEEVGKDYEHVEAQRKKFDDFEKDMISKEVRIRELTLHAEKLKVERYTEYEMIHEMIERLEQKWANLVAMSEQRKENLDNAQEIQKFHRDADDTKAWISEKDTALSTSDYGRDLASVQALQRKHEVLERDLAALEEKVRELNVEAAKLTSSHPSAAQDIEWKRHELEEAWANLREQAAARKGKLRDSYDYFHFLNEFRDLTSWINGIMALVTSDELAKDVASAEALLDRHQEHRAEIDARDSTFQSFEDFGKDLLDKEHYASPDIREKLDTMAAEREELERAWALRKQRLDECLELQTFNRNAEQLEQWMATREAIIQSEDVGAAEGAEALIKKHEDFTKTLAVQDVKISALNDEAKRLIDNDHYDSPAIAERISTVLARWATLKAALVERRSKLGESKTIQQFSRDAEDIEAWVSEKLQTVLDESYKDPTNLQSKFQKHQAFEAEVSANQERVLETINLAEGLIEQRKCAGSEEIVKERITKLQQQWEYLVQKSNEKSQHLKESNQQQQFNTNVKELDFWLGEVDASLSHDDFGRDLASVQNLMKKHQLVEADITAHEDRITDLQAQTQHFAEVGHFDADSLQDKSRGIAERYEKVKDMAADRHKKLDESNALHQFYRDLDDEESWIKEKKLLTSSEDYGKDLTGVQNLRKKHQRLEAELNNHEARIQAVLSCGQKFIDEGHSSSDEIKARCDQLQENWDELNSLAKQRQHKLDESLAYQQFSANVGEEEAWINEKNTLVGSDDFGDTLAAVQGLLKKHQAFETDLEVHRERVQDIENDGNQLIEKENHQAELIEHKISSMKNKLLELERMASYRKAKLNDNSAFLQFNWKADVVESWIGDKEGIARSDDLGRDLSSVQTLFTKQETFDSGLQAFENEGIARVTILKDELVQSQHEQSPAIIKRHDDLIRRWEQLLEDSKTRKERLQHAQDQYKKVEDLFLLFAKKASAFNSWFENAEEDLTDPVRCNSVEEIRSLQDGHAEFRASLDQAEDDIMMLRKLDRQIKSYNVSINPYTWFTMEALEDTWENLQKIIEEREDDLSKEAQRQEYNDNLRQEFAQAANSFHAWLSDTRVAMVDGQGDLEDQLAEVKKKSAEIADRKEDLRILEDLGAQMEEALILDNKYTEHSTVDLAQQWDQLDQLAMRMKHNLEQQIQARNTTGVSEETLKEFTIMFKHFDKDKTGYLDHQEFKSCLRSLGYDLSIVEEGEEDPEFEAILRTVDPNGDGVVSMGEYMSFMISRETENVGSSEEVINAFKALTEGGKRLYVTEAELYQSLTKEQADFCIDRMNPYVDDKGREVPGAYDYKTFCEKLFCSS

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13813	Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTAN1 PE=1 SV=3
P16086	Spectrin alpha chain, non-erythrocytic 1 OS=Rattus norvegicus OX=10116 GN=Sptan1 PE=1 SV=2
P16546	Spectrin alpha chain, non-erythrocytic 1 OS=Mus musculus OX=10090 GN=Sptan1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003297 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF08726 all species →	EFhand_Ca_insen	Ca2+ insensitive EF hand	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR014837 all species →	Domain	EF-hand, Ca insensitive	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR035825 all species →	Domain	Alpha Spectrin, SH3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06114	SPTAN; spectrin alpha, non-erythrocytic (fodrin)	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074621265.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

83TPM > 0

2Conditions

238.9Max TPM

127.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	45	117.32	238.95
all_coral_tissue · baseline	38	38	138.78	226.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	238.95
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	238.55
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	230.32
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	224.65
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	219.29
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	217.06
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	216.91
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	210.47
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	208.17
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	188.27
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	179.84
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	177.36
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	176.26
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	173.33
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	160.37
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	149.14
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	143.32
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	134.18
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	130.70
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	130.16
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	124.39
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	119.39
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	109.89
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	107.93
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	102.34
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	99.21
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	81.79
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	77.23
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	75.13
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	73.17
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	60.87
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.65
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.50
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.82
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	53.75
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	48.16
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.67
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.95
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.30
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	39.47
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.35
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.01
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.95
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	37.48
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	29.04
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	226.52
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	225.81
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	204.37
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	202.52
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	201.25
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	194.85
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	193.76
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	190.28
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	188.69
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	186.82
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	186.66
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	185.97
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	184.12
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	180.84
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	169.04
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	166.48
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	160.62
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	159.96
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	159.86
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	156.44
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	151.61
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	147.04
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	143.66
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	129.67
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	125.37
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	88.53
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	87.07
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	85.59
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	79.85
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	79.26
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	69.12
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	68.12
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	56.21
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	54.01
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	53.65
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.54
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	45.54
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.90

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.