Gene detail

Detailed information of XP_074622020.1 in Acropora palmata

Genomic Location: NC_133886.1:22079838...22102546
NR annotation: CAH3156029.1, unnamed protein product, partial [Porites evermanni]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074622020.1

ATGCTTCCTTCGAAACAGAAAAGATATTTCGCTGAACGAGATTTGTGCAATAATTTCACAATTGACGAACAAGACATTATTCTTGCTGAGGAGAATTCGTCCAGGAGCGATGAGGAATGCCTTCTTATTGGTCACACGGATCTCCTTTCGCGGACAAGAGCTGAGCAAAAGGAAGATGTCGCGCTTCTCGGTCCTTCCGAGGTCCTCTCGGATGTCATGGATCCGAGGCTGGTGCAGAGGACTGTTCGCATCTTCTTAAGTTCGACCTTCACTGACACCAAGCTGGATAGAAATGAACTCATGCAGAAAGTATTTGAACCAATCAGAGATATTTGCCAGCTGCATGGTGTTGCATTTGAGGTTGTGGACTTGCGATGGGGTGTGCGGCAAGAATCAGTGGACGATCATCGTGTTGTTAACATTTGTATGGAAGAAATAAATCGCTGTCAAGAGATATCGCTTGGCATCGCATTTATTGCCCTTTTGGGAGACAAATACGGATGGCGCCCCCTGCCTCCGTCTGTCGACGCCGATGAATTTGAATACATCCTTGAAAGAATCAGTGACAAATCGGACAAAGAGTTGATAAGTACCTGGTATCATCGTGATGGTAACTCCGTTCCACCATGTTATCTTCTCCAACCAATTTCGTCCCAGTTTCCCATTCACTCCACAGACGGCAACGAACTCTCCGAAGCTTGGAAGGACTGGAAAAAAGTTGAAAAGACGCTCTGGAATGCCTTGAAAGCAGCGGCGGACCAAATAGGACTGAAAGACAAAGATAAACAAAAATACATGGTATCTGTGACGCAACTGGAGGTTGAAAAAGGCGTGGTTACTGATCCTGAAGCGAACCAGCGATCTGTTGTCATTGATCGTAGGTTTGATGATATAAATGAAAAGGACAAGGAGGCGAGAAACTACGTTAACCTGACGGAGGATGGACAGAAAGACCTTGAATGTCTCAAACTTCTTTCGGAGCTTAAAGATCATCGCATTCCTACTTCACTGGATATCGGACGAGTGTTGCAATTCAGTAACCTTCGGTGGCATTACGAAGGTCTCCAGAAGGACAGTCATGGAGATTACCTGAGAGAGATGTGCAAGCGAACCAAGGAACTTCTGACATCCCGCATAACCGAAGTGATACAAATTCTTGCTCCCTCCAATCCAGTTATGGAAGAAGTCACGCGTCACGCCATCTTTTGTCGAGACCACACACGCTCATTCAAGGGACGTGAAGAGATTTTGCAAGACGTTCATAAGTACCTCAGTAGTCGAGATCCCATGATGCCTTTGGTGGTTCATGGCGAATCCGGTGTTGGGAAGACGTCGTTGATGGCAAAGGTTGTTGAGGAAACTCAAGACAACAGCAAGGACAAAAATGTGGCTATCTTGTATCGGTTTTGTGGAACGACCCCCGACTCATCGACTGGTCGATCCCTCACAGAGAGTTTCTGCAAACAGCTAAAGCTTGTGTACAATATTGACGATGAGGTTCCAGAAGACTACAAAGGCTTGTGCGAGATCTTCCCTAAATTTCTCGAGCATGCTTCGGAGAAACGACCTTTGTACATTGTGATCGATTCTTTGGACCAGTTGTCTGACGCAGACGGTGCAAGGCGTTTCTTGGAGTGGTTGCCACGCAGTCTTCCTGCGCATGTGCACATGGCAATATCAACCCTTCCAGAGGAGGGTGGGTGTCTTCAACGCTTGAGATCATTTGGAATACCATCTGAGCAATTCTTAAAGGTGACGCGACTCGATGTGGAAGCTGGACCAGCCATCCTGGAAACCTGGCTTCAATCCGTGAACAGAACGCTGACCTTTGACCAGCGGTCGACTGTGTTAAAAGCCTTTAACCGCTGTCCGTTGCCGCTCTATTTGCATTTGCTTTTCACTACGTGTCGTTCGTGGCCTTCCTTCAAAAAAAAAGCAGACATCGTCCTTGAGGCTGACGTAATCGGGCTGATACACTCTTTGTACCAAACCCTCGAAAAGTATCACGGTCACATGTTGGTGGCGAGAGTCTTAAGCCTTTTGGCAGCAGGAACCGATGGGATGAATTCAGAAGATATTCTGAACATTTTGAGTTGTGACGAAGAACTCTTAGATGACGTTTTAGTCTGGCACCAACCACCAAAGCGCCGCTTACCACCCTTACTGCTGGCTCGTTTAAAGTACGATCTTGGACCGTTTTTAGTCGAGAGGGGTGCGCACGGTGTGTCTGTGCTGGCTCTGTATCACAGGCAATTTATCGAGGTGGCCAGAGAGAGATACCTTGAAAAAGTTTGCAACCAGGGAACTCATAGCAAGATCGCCGACTACTTCTCAGGAGAGTATCACAAAAAATACGGTGAAGAACGAGACGTACCGGCTCAGCCCCATGCTTACTCTTCAGCCGCTCTCAATCTGAGGAAACTAAGTCGACTTCCCAAAGCTCTGCTCGAAACACGTGACTTTGCAAGGTTGCGAGGTACGCTGGGAGACTTAAAGTTTGTTCAAGCGAAGTGCATGGCGGGAATGGGTTATGAGCTTGTAGCAGAGGCTACCAAGGCGGTCAGTTTTGCAGTTGATGGAAAAGCAGAGCCTGAGGTCGTCAAAGATCTTGAAGACATCTTGGCATTCCTGCGCAGCGAGATCCACATTCTTAGTGGGTCACCTATCCTAACCTACCAACAGGCAGCGACATATCCAGAAGACCAATGGATCGCAAGGGAAGCATTACGCATGCGCCTCGTATTTCACCAACCCGACCCTGACAACGTTCCTAACCCCAAGGGGTGGGTGGAGTGGTTGAACAAGCCCAAGGTCCCGGAAGCTTTCGAACTTGAACTCAGTGGACATTCCAAATCCATCCTGTCCATTTGCTTCGCAAAGGACAACAGGACTTTGCTTTCGAGTTCTGCCGATGGAACCATTCGAGTTTGGGATAGCCAAACAGGAGAACTGTGTTCACAGCTTGAAAATCATCAAGGACCCGTCACATGCGTTCGGCTGTCACCGGATGGAACAATCATGGCGTCCGCATCTGCTGACAAGACTATCCGACTGTGGAGATTTCCTGCCAACGAGTGTTTAAGGACGCTTCAGGGACACGAAGATCGAGTGACCTGCGTTGCCTTCTCGAAAGATGGCGACAAACTTCTGTCTTCTTCAAGAGACAAGACTCTAAATATCTGGGACCTGAACAAGGGTACGAGGCTAGATACACTCAGGGGTCACAGCAGTTTCCCTATGTCATGTGCCTGGTCACCTCTCGATCAATCTGTTGCTGCATCGTGCGGCAATCAGCTTGAACTCTTTCTATGGGATCTCAACGAGAAGAAAATCAAGTTTACCTTGGAAGGACATCAGCGAGACGACAATCCCAATTTTGCAGTCAAAGACACATTGGAAGACTACACCGAGCTTGACTTCAGATCTCTCGTTTGGTCCGTGTGCTTCTCTCCTGATGGAAGGCACCTTGCTTCCGCCTGCGTAGATAGTGACGTCATCTTATGGGATGTGCAAACTGGGGCGAGGGTGAGGACATTCAACCTTCCAAACGACGCTTCGACTGTGTCTTTTGTCAGGACAGACCACGGTACGCTGTTGGCTGCTGGATCATCCGCTCATCATACGGTGACGCTCTTTGATGCAACCTTTGATCGTATCAGTTCCGATGGCGGCAATGCTACTTCCAGTGCCCTCGCTTTGTTGGGTGGTCATTCGGATTGGGTACTAGATGTGGCGTTTAACGGAGATGGTACTTTGTTGGCATCCGCTTCTTCTGACAAAACCGTGCGTGTGTGGAACGCTACAGCAGCGAAAAAACTGCGTGAAGCGCGTTTTCATTCTGAACGCTGTTGGAGCGTTGCGTACTCCGAGGACGGAAAATGGCTGGCTTCTGCATCAGATGACTTTAAGGTTTGTGTGTGGGACATGGACGCACTCAATGTTTCCTTGATCTACGAAGGGCACGAGAAGAAAAGAACTTTTTCCTGCGGGGTGCGCGCATGTACCTTCTCACGAGACTCAAGCCAGGTTGCCAGTGGTGGAGATGAGCTTACAATTCGTATCTGGTCACGAGAGACTGGCAAAGATAACACAGTGTTGCACTGCGGCAGGTCCATGCTTCCTTGGTGCCTTCGATTCTCAGTGGACGACAAGCGATTGGTCTCCGTGGGCGAGTTTACCAACGGTGCAATCGTTTGGGATTTGGAAACGCAAAGCAAGGTGACGGTCTTGGAAGGGCATGAACGCTTTTGCCAGTACACTGAATTCTCGCAATCAGGAAAGTACATCCTGACCAGCTCCATTGACAACTCTGCGAAAGTGTGGGACAGCTCCAACTTGCAGCACGTGACCACTGTCACGCAACCCGATTGGGTAACCTGTGCCACCTTTTCCCACAACGAGAAGCTATTAGCCACTTGCTCGAAAGATGAACTGGTTCGCTTGTGGGACACAACCTTTTGGAAGGAGAGACGTGTGATGCGAGGACACGATTCTGAGATCCGCATGGTTAGTTTCTCTCCCAGTGATCAGTTCTTGGCGAGTGGAGCCTTGGACCAAACCATCCGCGTCTGGAATTGCGATACCGGTAAACAAGTTCAAGTGTTTTACGCGGCTTCAGGGATCTGGGGACTAGCCTGGCACCCTACGAAAGAGGATCTCGTGACCGCGGGAGATGCCGTTGGGTATTTATATTTCCTTAAACTTCACCAAAGACATGAATGTGAAGCCCTAAAGAATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q149M9	NACHT domain- and WD repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=NWD1 PE=1 SV=3
Q6P5U7	NACHT and WD repeat domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nwd2 PE=1 SV=2
A6H603	NACHT domain- and WD repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Nwd1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004835 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13271 all species →	DUF4062	Domain of unknown function (DUF4062)	Family	Interproscan
PF13191 all species →	AAA_16	AAA ATPase domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR052752 all species →	Family	NACHT and WD repeat domain-containing protein	Interproscan
IPR025139 all species →	Domain	Domain of unknown function DUF4062	Interproscan
IPR041664 all species →	Domain	Orc1-like, AAA ATPase domain	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19871 all species →	BETA TRANSDUCIN-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074622020.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074622020.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

69TPM > 0

2Conditions

28.8Max TPM

10.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	37	8.37	21.73
all_coral_tissue · baseline	38	32	12.58	28.82

Per sample · hover a bar for the full sample record

Show the sample table (84 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	21.73
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.71
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.26
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.21
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.50
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.47
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.32
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.14
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.91
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.31
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.93
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.51
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.43
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.17
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.31
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.30
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.93
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.83
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.05
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.04
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.94
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.84
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.26
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.16
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.03
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.01
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.98
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.75
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.60
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.12
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.85
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.75
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.80
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.69
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.05
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.26
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.82
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.40
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.70
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.18
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.06
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.16
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.12
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.41
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.91
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.80
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.35
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.26
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.20
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.20
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.76
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.88
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.67
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.59
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.31
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.85
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.29
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.18
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.89
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.70
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.68
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.62
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.47
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.38
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.38
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.45
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.45
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.90
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.