Detailed information of XP_074622331.1 in Acropora palmata

Genomic Location: NC_133886.1:23785272...23837187
NR annotation: XP_029196145.2, polycystic kidney disease 1-related protein [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B8UU59Polycystin-1-related protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
O08852Polycystin-1 OS=Mus musculus OX=10090 GN=Pkd1 PE=1 SV=2
Q2EG98Polycystin-1-like protein 3 OS=Mus musculus OX=10090 GN=Pkd1l3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004670 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08016
all species →
PKD_channelPolycystin cation channelFamilyInterproscan
PF01477
all species →
PLATPLAT/LH2 domainDomainInterproscan
PF00801
all species →
PKDPKD domainDomainInterproscan
PF02010
all species →
REJREJ domainFamilyInterproscan
PF01825
all species →
GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF01822
all species →
WSCWSC domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035986
all species →
Homologous_superfamilyPKD domain superfamilyInterproscan
IPR000601
all species →
DomainPKD domainInterproscan
IPR001024
all species →
DomainPLAT/LH2 domainInterproscan
IPR013122
all species →
DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR022409
all species →
DomainPKD/Chitinase domainInterproscan
IPR002889
all species →
DomainCarbohydrate-binding WSCInterproscan
IPR002859
all species →
DomainPKD/REJ-like domainInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036392
all species →
Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR000203
all species →
Conserved_siteGPS motifInterproscan
IPR046338
all species →
Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR000434
all species →
FamilyPolycystic kidney disease type 1 proteinInterproscan
IPR014010
all species →
DomainREJ domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46730
all species →
POLYCYSTIN-1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005261
all species →
Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0006816
all species →
Biological Processcalcium ion transportInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04987PKD1L1; polycystin 1L1-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074622331.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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