Gene detail

Detailed information of XP_074622441.1 in Acropora palmata

Genomic Location: NC_133886.1:17347556...17368156
NR annotation: XP_029194928.2, ATP-dependent RNA helicase DHX30-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_074622441.1

ATGGCGCACTCTAGCTCCAGAGGGGTGAACCGGCCACACGGCAGAAACTTTCAACTTAGAAATATTCCTCCATTTCAAGCGGGACCTCGGGTCAGGTGTCATTTGCCCCTTTCGTCTGATTTTGTTTTCGATGAAAGTGGCTTTCAAAATTTAAACCCTCCTCAAAATACTCCGAAATTTGTACGTCGCAACATGAACTCTTCCATCAAAAAGCCTGCTCATATTTGTGTCGGTTTTGAGGCATCACAGAGATTTCCAAACGCTAAGGAAAAGTTACATAATGTCCTTCAAGGTGCCATGAAAGGGCATTCATTGACTTTTAATTGTCAAGTCGTGAAAGGTCAGTTTTGGAAAGCGTCTGTGAAAATTCCATGGCCCAGGGAAATGACATTTTATGCCGAAGGACCTTCAAGAAAAGAAGCGGAGAAAAATGCAGCAGCAATTGCTTGCGTTGAGTTGGAAAGAATTGGAGTGGCAAATATGAGTTTAGCTGGAGTAATAAAGAAAGAAGCTGTTCAAAGTATAGATGAACCCAAGTGGATTTATATTGATGATGATCAACTGTCCATGGTTGAGTCTTTTCTGCTAAAGAATTCTGTTCTCAGCCAGCAACTCCATAGAGATCAGCCTCATCCTGTGAGTCAAGTATTGATCCAAGGTGTTAGTGCGTCTGGAGGTGGGATACAGAATCAATCGACTTCCCAAATGAGCAGTGATATTTCTGCTCCACTGGAAAACACAGATACCAAATACTGGAAAGATGTGGATGTTGAAGATTTTTCCACCTGGGATATACATGTACCACATGCAATAAATGTTTCAAGCTCTAATGACAGCTGTAGTTTGGCAACTAAAAGTACTGGTTGTACTCCTGTTGTAAATGACATATTTACTGGCTTACCTTGGAAAGAATTCACAGAAGAAAATCATATAAAGCTTAGTGAACATTTGCTGCAAGGATTCAAACAAAGACAGGAAATGCTGGGGACAAGAATGTCATGGCATGCTGAACCAAAATACAAATTGCCTGTTTCTGATTACAGGGAAAAGATTGTTAATTTGATTGAGGAAAACAAAGTTGTTGTGTTATCCGGAGAAACAGGATGTGGCAAAACCACACAGATCCCTCAGTACATTTTTGATCATGCAATAAAGAATGGCAAAGGATCACGCTGCAACATAGTTGTCACACAGCCACGACGTATTGTTGCAATGTCAATCGCAGAAAGAGTAGCGTGGGAAAGAGGTGAAGTCCTTGGAAAAAGCATTGGATATCAGGTGAGGCTGGAAGGTACACCCCCAACACAGTGTGGACGGATCTTATTTTGTACGACAGGGATATTATTGAGAAGAATGCAGAATAATAGTCTCTTACAAGGTGTCAGTCATGTTATTGTTGATGAGGTACATGAGCGAGACATCAATGCAGATTTCTTGTTGATCCTCCTAAAGATGTTGGTTAAAAAGAGTCAGGAAATCAAGGTTGTGGTGATGAGTGCGACAGTAAATTCAGACAAATTCTCACAGTATTTTGATAGCTGTCCCAGTTTGACAATTCCTGGTGTCACACACCCAGTGACAGAGTACTTCCTGCCTGACATTTATCGATTGCTGGATGGAACACCAACCAGAATTCCTACGCCACCACAGAGCAAGAGATTCAAGCCTAGCAATCATTTTGCCAAGGCGCATAGTGATTCATCATACCCAGAGGCTGATGTTGAGCTTGTCTGTGAAACTATTCTGCATGTGTGTAGGAACTACGGAGAGGGCGCTATCTTGTGCTTTTTAGCTGGATGGGATGAAATTACTCTTGTTAATGATATGCTGTCATCAAAAATACACGCAACACAGAAATCTCAGTTCCTTATCCTGTCACTCCACTCAATGCTTCCTATGTTTAATCAAAGAGTAGTATTTGAACGGTCCCCTATTGGGGTTCGCAAGATCGTTTTGGCCACCAACATAGCAGAGACGTCAATCACCATTGATGATGTGGTGTACGTCATTAATGCTGGAAATGCAAAGGAGAAAAGATACGATGCAACAAACAAGGTATCCTGTTTAACCACCCACTGGACTTCGCAAGCGAGCGTTATCCAGAGGCGCGGTAGAGCAGGCAGATGCAAGGCAGGCTTTTGTTTCAACCTTTTCACAAAGGATCAGTTTCAAAAAATGGCCCGATACCAGATGGCTGAGATGCAGAGAAGCTCATTGGAAGAGATTGTCCTACAGACAAAGGTCCAGTGTCCAGATAATTCCTGTAAGGTGAAAGACTTTTTATCCCAGGCGCTTGATCCCCCATCACCATTTGCCGTGCAAAGCGCAATATTAGAATTGCAGGAAATTGGAGCGATGGATCACCAGGAAGAGCTGACCTCCCTTGGAAGACACATGGCTTATTTACCTGTTGAGCCTCGTATTGGAAAAATGATTATCTATGGCGTGATCTTTAGGTGTTTGGATCCATTGTTGACCATTGCTGCGGGTCTAAGTTACAAAGATCCATTTGTGACCCCTTTGAACTGTCGACAACAAGCTGATCAGTCTCGTAAAGATTTTGCGCATAGCAGCAAGAGTGATTACGTGGGGCTATTGAACGCTTTCAGTGGATGGACAGAAGCTATGAGCCAGTCGCGTGGAAAGGAGTTTGCCGATCAGCGGTTTCTTCATTGGGGCACGCTTAATATGATACGTGGCAGTGATTGTTATTGTCATACACGCGACATCCATAACCACAACAACCAGCACAAGGGTGTCATAAGAGGCTCCTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q2NKY8	ATP-dependent RNA helicase DHX30 OS=Bos taurus OX=9913 GN=DHX30 PE=2 SV=1
Q7L2E3	ATP-dependent RNA helicase DHX30 OS=Homo sapiens OX=9606 GN=DHX30 PE=1 SV=1
Q5R607	ATP-dependent RNA helicase DHX30 OS=Pongo abelii OX=9601 GN=DHX30 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF04408	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR048333	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14442	DHX36, RHAU; ATP-dependent RNA helicase DHX36	EC:5.6.2.6	Translation factors	ko03012	deepkoala