Gene detail

Detailed information of XP_074622862.1 in Acropora palmata

Genomic Location: NC_133886.1:3926605...3952591
NR annotation: XP_015770992.1, PREDICTED: uncharacterized protein LOC107349364 isoform X1 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074622862.1

ATGGATCAAGCAGTCACCGATTCCGTCAATAATGTTGGGAGCCTAGCATTTGTTCGAGGCTTCAGTCAAGGCTTCTCGCACACGGAATCAACAGCCTGGGTGCGAGGCGATTGCTTCCCTTCTTATGTTGAGGTCGTCACCAAGTTCCCAGTCTCTGGCAATTCAATGGTTGCGTTCGTAAACCAATGGAGAGGGCGTGCGTCTTTGAGCATTGGATTAATATTTCCTGAAGACAGGACACGTTGCTACCCTAAAAATGGAGAATGTCCTCAAGTTAGAGGACAGCTTTGGGGTTGGACAAGTAAATCACAGCAAATATACAGTAAGAAGTATGACTCCAGTTGCGAGAAGGGCAACTGTCCACAAAACCCCATAAAATACCACGACTGCAAAATTACAGCGGGGGTAACAATTTCCTGCTATGTGAAAGAAAAACAGGTTCACTTTAGCATCGATGGAAATGAGCAATTTGTGTCGACGTGTGATAAACAAAAACTCGACTTCTGCTACGGATTCATACGCCTGAAGTGTGACGACAATGACAGTGAAGTTCGGGTTACACTCTTTCCAGCGAGTAATCATGAAGCAGTCCTCAAAGCCCAGAGAAAAAGAGAAAATCAACAGCTCAGCTCTTACAGGATGGACCGTCCTGGAATTTGCCTGCTGATTAACAACGTTAAGGACTCGGCTCGTGAGGAGAATTTACTCACAGAACTTTTCAGTTCCCTTGCGTTTAACGTGGAGGTTAAGCGGCGTCTTTCGATGATGGAGATCAACGAGGTTGCCCAAGAATTTGCTAAAAGAGACCACAGTGGTTACGACTCATTCGTCTTCATCCTGTTGTCACAATGCGGCCCAGGTGAACCAATTGTTGGTGTGGATGGAAGGGAGGTGATTCTGAAACAAGTGATGTCCGAGTTTCGACCATGCCGTAGCTCTTCTTTGGAGAACAAGCCCAAGCTGTTTTTTGTTCTAAAATTGGTAGATTTTAGGACCCAATCTACGGACCGTCGCAATGTTGGGACTGAATTCTGCACCGACATAACCACAGAGTTGCCTAATTCTTGTAACACGTCCATACAAGAAGTGTGCCCGGAAGAGGCTGATTTTTTGTTAGCTTGTGCCACCTCACCAATTGTTAAAGGAAAAAAGATAAAGCAGCCTCAACACTCGTTCATTGAGATGATGGTCAATGCTGTCAGTAGATATCATCAAACTTATGATTTACTTGAAATGCTAACATTGCTTAACCACTGGACGGGTAATTTGCACAAGGAAAATGGCCAGTCATATGTAATGGTGCCTTATGTGTCCCATACACTGCGACACAAAGTATGCTTTGGTAAGTCCAGTCATGCTGTTTTGTCTACAACGCACGATGAAGTGGTCGTTGAAGGTTGCACACCCTTCCCCCCATTGGTTTCAAGACAAACGACGGAATTTCAAGATTCTGTACGGACACACGAACCACAAATTTCTACCCAGTCTTCTATCCCAGGTTTGCCTTCACTGAGCAGCTACGACGAGCACAAAACAGAATGCCCCGGTTACTGTGTTATCATCAACAATCGCCAGTTTCAAAGAAATGAAGTGGCTTATCGGGAAGGATCTGAACAAGACGTTGAAAGGCTAAGAAAACTTTTCGAATCACTTCGATTTGAAGTGATTATTAAAAGAGATCTGAAAAGAGATCAAATCGAGGGAGTAGCCCAAGAGTATGGAGACAAAAAACACGACAAGTTTGTGGCTTTCGTTCTAATTATTATGTCGCATGGCGATGTCAAAGATTGCATTTTGGGTGTGGATAACAAGCCGGTCAGCGTAAGAGAGCTCATGAGGGAATTTCAAGCTGAGAGGTGCCCTTCTTTGAAAGGAAAACCAAAGATTTTGATCATCCAAACATGCAGAGGTTCTCGCCAATGCGACGTTGAATCGGGAGATTTCGTTCAGAGTATCAACGCCGACCCAACGGAATTTGATCTGCCAGACAACTGCGTTGGTCCATTCTCGCTGGACTCTTCCCTCTCAAAGAGTGTGTTTCCTCCGGAAACTGACTTTCTTTTGGCATTTGCAACCGTGCCTGGTTACGTATCCTTCCGGTCACCAACGTCTGGTACCCTTTTCATTCAGGAGTTGGTTGAAGTTATTGAGAAGTACCATGGGTCTCATCATTTGCTCGACATGCTGACGGAAGTCACCAGACGAGTGATCGATCATCAAAACCGAGCGTTCGACCCTGATAAGTACAGGGTCCAGGTCCCAGCCCCTACGCACACGTTGACCAAGCTGCTATACTTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5IS54	Caspase-3 OS=Pan troglodytes OX=9598 GN=CASP3 PE=2 SV=1
P42574	Caspase-3 OS=Homo sapiens OX=9606 GN=CASP3 PE=1 SV=2
Q5IS99	Caspase-3 OS=Saimiri boliviensis boliviensis OX=39432 GN=CASP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002490 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan
IPR051290 all species →	Family	CASP8 and FADD-like apoptosis regulator	Interproscan
IPR002138 all species →	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48169 all species →	DED DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074622862.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074622862.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

55TPM > 0

2Conditions

17.3Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	30	3.77	15.72
all_coral_tissue · baseline	38	25	5.71	17.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.72
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.04
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.00
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.31
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.25
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.10
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.54
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.44
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.60
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.17
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.06
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.18
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.17
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.96
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.95
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.82
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.76
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.63
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.59
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.52
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.28
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.00
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.88
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.64
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.46
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.11
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.62
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.60
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.25
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.60
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.26
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.05
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.85
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.77
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.75
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.08
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.95
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.46
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.98
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.72
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.61
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.55
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.98
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.28
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.05
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.95
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.47
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.40
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.18
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.78
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.18
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.65
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.66
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.56
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.88
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.