Gene detail

Detailed information of XP_074623643.1 in Acropora palmata

Genomic Location: NC_133886.1:20063124...20090931
NR annotation: XP_044178964.1, LOW QUALITY PROTEIN: deleted in lung and esophageal cancer protein 1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074623643.1

ATGTCACAAACAAAGGAAATGGAAGTAGAACCTCCTATGCACCTGCCGCGACCTTCTTCGGGTCGCTCTCAAGATGTAAGCCATTTGCTTGCAAGTGTGTTCCGCGAGGTTTTCACTCGCGATGTCATTTCAGATAACACTGTCAAAAATCTGGCAATTTCCAAAAGTGGAGATTCAGGCTACCATGATAAGTACGTGGAGCAGCTAAGAAAGATACAAGAGGAGCGTGATCGTAGGCACAGAGATTCAGACATGCTGGAGACTCATATCATGCAAGCACAGGCTGCTGCAATGGCTGCCGATGAGAAGGAGCTGCAAAAAAAATCAGAAGGATATGAAAATTACCATTCCCTGGGCTTACCACCAGCCAATTCGAATCTCAGGAACTTCCTTGACACTGAGCTGCTGAGAAGCTTCAACCTCATTGTACCAGAAGACTTTTTGGAGGAGGAGGTTTCTGCTTCAAAAGCACCTCAAGCTGATGAAATTCCTGGATATGCCAGACTAACGTCATCTTCTCATCAGAGATTCAGAAAGACACCTCCTTTGACAGATTATCTGGATGACATGGATTTGTCTACATCCCCTTGGCCGTGGGCGTCACTTTCAGCACAAGCTGATGAAAAGAGAAGAGAAAGAGAGATGTATACATTATCACCCACAAGTGCTAAGAGCCGACTTACAAAGCCTTCTGTTTGGAAAGAGTCCATGAAACCCGAACATCGGCAAATAGAGAGAGATGACTTGAAAAGGTTACAGAACAAAGCAGAGTACAAACGGAATCCTCGATTTGTACCTCCATTGAAATCGGGTCTTACAAAATCAAACAGAGATAAAAAGAAAAAGAAACTAGAGACAGAAAAGGAAAGCAAACCCATTGATCCTGTTGAGATCTTTATCGCATCACCATCTCCAGTTCTGTTCACAGCCTATGAAGCTGGAAAAGTATATGAGTTGTTGTTGGAACTTAAGAATGTGTCATCAACAAGCCGTCAGCTTAGAATTATTCCCCCAGCAACAAAGTATTTTTCTGTTGGTCTAGGAAGATTCCCAGGAGAACATGGTGTTGTTGCACCTGGACTGAGTTGTCAGTATCCAATCAAATTTACGCCTGATTCCCTAGGGGACTTTGATGATGTGCTGAAGGTAAAAACACAAGTGGATCCCCCCTTGATTATTGCAATCCAGGCCCGGAGGCCACCGCCCGTATTATCATTGTCTCCTGTGCTTGATTGCGGTCACGCCTTGGTGGGTGGCAAGAAAATTGTTCAACTAAATTGTGAAAATAGTGGAGGAGATGGACAGTTTTGTATCATGAAAAAATCTTCTTGGCCCTCTACAAAAGTTGAGTGGACTTCACAAGATCTTGGATGTGTTCTTGCTGAACCATTTGAACTCAAACCTGCCATGTTTAAGTTGGCTGCTGGAGAGACGACAACGATAGAGATCACGTTTTGTCCCTTGTCAGCCAAATACTTTCAAGAGGAAGTGGTCCTCATTTGCGATAATTGTCAAGTTAAGGAATATACAATCGAAGGAACTGGTCAAATGGCAGGCGTTGAGCTGGAAGCCGTATCTGGTGGATTAAGTGAGCCAGAGATCGGCGAAATGCGAGATGTGTCCGCGAAGTATCTCGTGCGATTCCAGCCGCAGAACCCAGAAACCATCACAGAGAAGACTCTGGTCATCAAAAATACAACGAATGTTGCGCTCCCATTCCGCTGGAAACTTTACAAGCCGTTCTTTAGGTGCCCTGTTTCGCCGGGGTGCCATGTGCAGCCATCAGTGGGATCATCTCAAGTTCCGCGTACCCCAGAGGATCTCGGGGTATTTGTTATAACGCCAAACATGGGTACGATACCACCTCATCAATCAGTGGACTTCATTCTGGAGTCTTCCCCAAGAGAGATCGGTAGTTATCACAGCGTTGGTCACCTAATTTTGGAGGAAATCCCAATTCTTGATGCAGCTGGCATTTCCACTGGTAACGTTAAAGAAGTCACTGTTGTCGAAGTAGAAATGAAAGCTGACAGCAAGCCATTTGACGTGTGTGTGTCTCCTCCTGTAATTGTTTGTCCAGGGACACTTGATATTGGTGTCCAGTACAGATTCCCGGTCAAGGTGATAAATAACAGCACTTCGAAAGCAGTTCTTTCCTGGCGAAATATTGAAGAATGCTTAAGGAAGATAGCAGTTGAACCACAATCGTCGACACTTGGTGAGGGCGAGCAAATAGACTTGGAGCTGGTGATGACGGTTCTTGAACCAGCACAGATCGAAGAAACTATCCTGTGTGACTTGAGACATTCATCTGCGCCAGTTTATGTTTACATCAAGGCTACATTTGTGGGACCGGAGGTTGTGTTTACGTGTCCAGATCTGAACTTCCATCTCGTTCGCTTCCGGGAGAAGGATGCATGCGATCACGTCTTCTTAGAAAACACATCAAGTATTCCAGCAGAGTGGAGCCTGAAGGAATGCGTGGAATGCTTTGAGTCAGAGGGTGCGCCACCATCCGAGTTTCGATTCAGCCCAGACCGCGGAGTGCTCGCTCCACAGGAGACACAACAAGTTCAAGTGTCGTTTGAAGCGAATGACGGCCCTCGCAGAGTGAGAACCGCATTGCAGTGTGATGTGAAGAATGGCAAAACAAGCTATTTATCAGTGTTTTGTGAAGTACAGAGGCCACTAGTTTGTCTCTTGTATTGCGACGTGCTGATAGAGAAGGTGTATCTTGGTGTCCCTGTTAGCAGGGAAGTGGTTCTTCACAATCAGTCGCTGTTGACAGCACACTTTAAGTGGAAGGAGGTGCTTGAAGGAGACTACACTCTAACGTTTGAGCCCATTCGAGGGTACCTGGAGCCAAGAGAAGAGATGTCAATTAAACTTACCTTCACCGGTCACAAAAAGGGTCCCGTCAGTGATTTTGTCACCTGTTGTGAAGTGGAAAGAATGCGAGAGCCTCTGATCCTTTCAATCTCGGCTGATGTGGAAGGACTGGGTGTTACATTTGAAACTCCAAAGATGTTTGATGTTGAGAGACCTGAAGAAATCAAAGAAACTTCGCCTGATGATCGCCAGCTCCTTCTTGATTTCGGAGCAGTACCGCTGGCCAGTTGTCCTCGAACCATCCTTGTACTGACAAACACCTCAGCGATACAAGCTAGCTTTAGTATAGAAATGAATTACTTTCGCGCAGCGAAACCACCGACACCTCCAGATGGGGCACCGAAAAGCAAGAGGGGACGAATATTGGGGCGGACTGCAAATATTGCTGATCCCATCAGCAAGACTTCCACGAAAGCTCATGCAGATTACTGTCGATCCATTTTGCATGAGGGAAAGGGAGCTGCGTTTGTACCGAGTTTAGCTTCCGGTGAATTGTTACCATTTGGGTACCAAGTGATTGAACTCACAGGCTACAGCGACATGTGGGGAGAGTACAAAGACTCTCTGCATTGCAAGATTGAAGGTCTTGAACCTGTTTCTATTCCCGTGAAGATGGACGTCGTAGGCTGTCCACTCAATTTGCAAATGATGAAAGAACAAGCGCCGATTCTCCGGTTTGGAACTCACGTGTCTGGGGCTCCGTCAGTGCAGAGATCGCTGAGAATCAACAACACAAGTCCTTATGACATACGCTTAGACTGGGCATCTTACAACGTTCAACCACAGGATACTCAGCTTTTGGATATGTTGGTATTCTTTGGTCAACCCCTTCCGTTGTTCAAGGATGGTGAGGAAGTGGTACCAGTTGCAAGGAAGGACGATTCTTTTGGAAACGAGGAGACACCATTTATAAAAGTAATGCTCAAAGAACACGATGGAGTACGCGCAGATAGGCCTTTTGACGTCACACCAAGGCAGCAGATAATTCCAGCAAAAAGCCACTCCTATGCCAAGGTGTCGTTCCACCCTTTCACAAAACACCCATCTGGCGAAAAGTGCACCGGTTATGTTGCCGCTTATATGAGCTTGGAGGATCAGGTCCTTAAGGTTCCTGGGTATGTTCATCGACGGCATGGTGTGGACTTGAAACCCTTCCGCTTGGACATGACAGCTCGCGTCGATCCTGCATTGCTTTCTGTTGAAACGGAAGAGGGTAGAGGAACAGAGTTTATTACCGCGGCCTCTGATCTGCTTTCTGGGAAAACCCCGTTGATCCATCGATTTGTGCTGGCTAACACCACTGAGACACCGCTGACCATGAAATTTGAAACGAAGCCTCCATTTCAGGTGGTGTCTGCTGAACCCCCACCGACGGCCAAGGCTTCTAAGTCCCAGACCCCGGGCACCATCAAGATCAAGCCCACGAAAACTGTTGAGTTAAAGGTGGGATTCTGCTTATCCAACGAACTTGTACGCAAAGTGAACGAAATACCAATCGACCAGGAACAAGAGGAAGGAACGCTGCTCACAAAAACAGAAGACGGCGACAGGATACTGATCTTCAAACGGGACCTGACAGTTCAATTTTCAAATAATTCTACACAGTCGATTCCTCTTGCGGCATCCATTGCTGTTCCAACACTTCGTCTGTCTCAAGATGTGGTAGACTTTGGCACGTGCCTGGTCGGTCAGCCAGTTGAAATGCACGTTATGCTGTACAATCCTTCCCAGTCCGGCTCGGCTTGGATCGCCAAGAAAGACCCGCGTTATCCACCCGTCAGTCAACAAGTCTTTGTCGTGTCGCCAAGCGAAGGTTTCCTGGAGGCCTACGCAAGTCTTGTATCCCGAACAAAGGCCACAATTAAAGTCACCTTCACAGCAAAACACAACATTGAATATGAGTGTGTCGTCATAGTCAGCGGTCAACTTCAAGAAGAAGAGCAGAGACTGGTGTTGAGAGGACGGGGCTCATATGATCAAAGTTACGAACGGTTGGTGAATGTCACCACAGAAACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y238	Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens OX=9606 GN=DLEC1 PE=1 SV=2
Q8BLA1	Deleted in lung and esophageal cancer protein 1 homolog OS=Mus musculus OX=10090 GN=Dlec1 PE=1 SV=1
Q68FQ8	Deleted in lung and esophageal cancer protein 1 homolog OS=Rattus norvegicus OX=10116 GN=Dlec1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002769 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_074623643.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR033304 all species →	Family	Deleted in lung and esophageal cancer protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46348 all species →	DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25548	DLEC1; deleted in lung and esophageal cancer protein 1	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074623643.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

64TPM > 0

2Conditions

13.4Max TPM

6.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	34	6.38	13.44
all_coral_tissue · baseline	38	30	6.96	12.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.44
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.42
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.91
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.27
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.15
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.11
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.89
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.02
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.55
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.96
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.70
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.13
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.07
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.02
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.52
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.45
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.98
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.85
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.72
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.67
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.66
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.58
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.50
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.00
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.98
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.83
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.70
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.20
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.16
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.08
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.03
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.87
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.23
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.74
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.96
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.50
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.46
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.38
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.91
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.80
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.53
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.46
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.31
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.05
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.76
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.63
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.02
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.78
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.40
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.30
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.26
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.15
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.14
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	8.12
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.95
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.90
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.72
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.11
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.69
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.60
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.20
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.09
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.74
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.50
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.