Gene detail

Detailed information of XP_074624297.1 in Acropora palmata

Genomic Location: NC_133886.1:7413989...7524353
NR annotation: XP_015766706.1, PREDICTED: semaphorin-5A-like isoform X5 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074624297.1

ATGAACACCACCACATATTTCTTGCTTTCCATTGATGAAAAACACAACAACCTTTTAGTTGGGACAAGAGATATTGTGTTCTTGGTGAAGTTGAATGATACGCATATGGAAAGTTATGAGTCTTGGATTCTACGTCAAAAGCCTGAAAAAGACACTTTTCTCGAATTGATGCTCCCTTATGAAGACAAGATTTTACTCTGTTGGATTGAGAGGCCATTTACGAAAAAGTGCACTTGGAGAAATAGGACAACTTTAGGGGAAGTTCCAACAACCGATCAAAGATATGTGTTCAAATCAAAAGAAAAATACAACGCACCAAGTTCACCAACAGAGCAGAATGACACAGCTATTATCACAGAGGATGGCACGCTCTTTTTTGGAACATCTTTGCCCGTTCAGGCGTTTGCCCGTTCAGGCATTTGCAGCAAGCGGTTAAAACAGCCCAATCTGAAGGAAGTCTGCAGCGATAGACAGAGTTCCTTTAATGAAGACGTGCATTTCGTAAAGAGCTTTGAAATTGGCACTTACGTCTACTTCTTTTTCCACGAGCGATCGTTGGAATGCCACAATTGCGGAAAGGTTAAAACGTCCAGGGTAGCAAGAGTGTGCACTGGCGACGTTGGTTACTTAAAGTTTGAAAGTTCGTTTGTAACCTTCCAAAAGGCCAAGCTAATCTGCAGTGATGGAATGAAGTACGCGCTGAATTTCAATGAAATCCAGGATGTTTGGTGGGACAATCGTACAGGACGATTTTATGCAGCTTTCACCGCACAGCCGAATGCTCCTGCGATATCCGCTATTTGCATTTACGAATTATCATCAATCAATCAGATTTTTAGCAACAGTCCCATCAGATCTTTCGTAAGTGAAACTGGGGGTTGGACCAAGAAAAAGAATAACTTGGAATACTTTGCTGGCTGCAAAGTGAATCCAAAATTTCTCAAAGGCTCTTCTTCTGTTGCTGATGGCGTGATGGCCACGAGGGATATGCAGTTATCAGCTTACGAAAAGCTAACACATGATCCATTGATGGCTGATGGAGTGGAGCCTGTTGGATCGAAAGCATGGATTATGAGCGACGGGATCAGAATGACTGGCATTTCCCTGGACGTCGTTAGGCGGAATATCGTGGTGTACGCTTCAACAGATCGCGGATCTGTCGTGAAAATTTCACAGCCACCAGAAATCTCTCAGCCATGTCTTTATTCTGAAATGGAAGTTTATCCATCGAACAAGAGAGAAGTCATTAAGACCATGGCGATTGATCAGCACCGGCACGTTCTGTACTTGGGGACACATTATTCGCTTACACAGCTGAGTTTGGATCAGTGTGAACGATATCAGTACGATAAGAGGGCTTGTATTTCGGCTGCTGATCCTTACTGCGGCTGGGACAACGAAACGTTCCGATGTTCTTCTGTTCTTTCGCATGGAGAGAGGCTACAACAAAACTTGACAATCTGTCCAAAAGGCCGCAAAGAAGCTAGACGGCCTTCATGGAGAACCTGTGTTCAAAGCGACGGAAACCTATGTCGCTGTCAAACACGTCGCTGTGAAGATAAAGGAAACACACCTTGTCTGACTGATGTAGAGGTTCGATTGGAAAATTGTACAGTGGATTTGTCGGTGGGCTGGGAGGGCGAACGCTCTTGGGAAATTTTAGGAGTGCAGCATGGTAACTGGAGTGAGTGGGGAAACTGGAGCGAGTGCTCGACAGAAACCTGGGCAGGCTTAAGGAACAGATCGCGGACGTGCACAAACCCAGTGCCCAGGAGAGGTGGGAGAACCTGCGTTGGAGACTCGATCCAGTATGAGCCATGCAGGCAGGAAGATCAGGGTGCCTCGGGACGACCGCAGGGAAATCACAGCGGCTGCACTGTTCACGTTATTGTTGCGGTTGTGAGCACCGCCGCAGTGGTTGGCTTGCTTGCGGCTATGGTTTACTGGTACCACAAAACGCGTGCACACAATGGTTTCGAAGCCGTGCGAAACTCCTCTCGTGTTGCTGGTGCTAAAAACAACGGTTTCGAACTTCAACAAGTAACTGAGAACCCGCCGAATGGTGCGTATACCAATCAAGCTCCCGACGAGGGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VTT0	Semaphorin 5c OS=Drosophila melanogaster OX=7227 GN=Sema5c PE=1 SV=3
Q90665	Semaphorin-4D (Fragment) OS=Gallus gallus OX=9031 GN=SEMA4D PE=2 SV=1
Q92854	Semaphorin-4D OS=Homo sapiens OX=9606 GN=SEMA4D PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001596 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027231 all species →	Family	Semaphorin	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036 all species →	SEMAPHORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001755 all species →	Biological Process	neural crest cell migration	Interproscan
GO:0030215 all species →	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335 all species →	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499 all species →	Molecular Function	chemorepellent activity	Interproscan
GO:0048843 all species →	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06521	SEMA4, CD100; semaphorin 4	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.