Gene detail

Detailed information of XP_074624612.1 in Acropora palmata

Genomic Location: NC_133886.1:21780499...21796328
NR annotation: XP_029187956.2, ATP-dependent RNA helicase DDX42-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074624612.1

ATGTTCCAGAAAGGTGGTCCAGGTAAACAAAGAGGATTTGGCTTCGGAGGTTTCGCACTAGCAGCCAAGAAAGAAGATTCTTCGCCCAGGAATATTGGAAGAGGTCTTCCTGTTGCCCAGTCAACTGCAATTGCCAAGAAATCAACTAATTCCCAAAAGTCTCAAAAGAGCGGCTCTTCATTTCCTCTTCCAGGAGCCAGAAAACCGATCTTTGTGGATAGTGATAATGAAGATGATGAAACAAAATTTGTGGATGATGATGACGAAGATAAAATCACAACGTCCGTTGTGAAAATGGAAAATGATGACGATGAGGAGGATGAGTTGGATAAATTCATGGCTGGAATTGAGAATGAAATGCAAAAAGAAGCAAATATGTCTGAGAAGGAGAGAAATGAAAAGAACAAGAAAAAAGTAAGAAGAGATGACATTGAAGATGAAGATGACCAGGAATCTTATTACAACTATGTGAAGAATGCCCCTATTGTTGCGTATCCTGATGATGAAGAGGAACTTGAATATGACAGTGATGGCAACCCTATTGCTCCAGAAAAATCCAAGATGATTATACCTCTTCCTGCTGTTGACCACGCGGAGATTGATTATATGGCATTCTCAAAGAACTTTTATATTGAACATGAGGAAATTTCCAAACTTACCTCTCACGAAGTCCAAGAATTGCGGAGGAAGCTGGCTTTGAAGGTGTCAGGAGCTTTGCCTGTGCGGCCTTCAATCAGTTTTGCACATTTTGGATTTGACGAGCAGCTAATGGGAGCAATTAGAAAGTTAGAATACACACAACCAACGCCCATACAGTGCCAGGCAATTCCAGTTGCCTTGAGTGGGCGCGACATCATAGGTATCGCCAAGACGGGTTCTGGCAAAACAGCTGCGTTCCTTTGGCCAGCGTTGGTTCATATAATGGATCAACCTGAGTTAGAACCAGGGGATGGCCCCATTGCATTGATCTGTGCTCCCACCAGAGAACTCTGTCAGCAGATCTTCGTGGAAGCGCGACGGTTTGGAAAAGTTTACAACATTAACGTAGTGGCTGTCTTTGGCGGAGGAAACAAGTATGAACAATCTAAGGCTCTTCAAGAGGGTGCCGAAATCGTGGTTGCAACTCCGGGTCGCCTCATAGATCATGTTAAGGCAAAAAGCACAAATCTACAGAGAGTAACATATCTTGTGTGTGATGAGGCTGATAGAATGTTTGATATGGGTTTTGAACCTCAAGTGAGATCCATCGCCAGCAATGTTCGTCCAGATAGGCAGACCTTGCTGTTTAGTGCGACATTCAAGAAAAAAGTCGAGATGCTCTGTCGTGACATTCTGACGGATCCAATCAGGGTTGTAGTCGGGGAACTCGGAGAAGCGAATGAAGACATCACGCAGATTGTAGAGATTTTACCAACAGGCACGGACAAATGGCCCTGGTTGACAAGTCACTTGGTCTCTTTCACATCGGCTGGCAGTGTGCTTATCTTTGTTACGAAAAAGGCCAACAGCGAGGAGCTGGCTGCGAAGTTGAAGACGAACGATTTTGAAGTTGTTCTTCTTCATGGAGACATGGACCAATTCGAACGAAACAAGGTTATCAACGCTTTCAAGAAGCAAGAAATTCCAATATTAGTCGCTACCGACGTAGCAGCCCGTGGATTGGACATTCCTTCCATCAAGACTGTCATAAATTATGACGTTGCACGTGATATTCACACGCACACTCATCGAATTGGTCGAACTGGCAGAGCGGGGGAAAAAGGCGTGGCCTACACTTTGATAACCCCAACTGATCAGAACTTTGCGGGAGATCTTGTGCGCAATTTGGAAGGGGCCAATCAGGCTGTACCGAGCGCTCTAATGGACATGGCTATGAAGAATGCGTGGTTCCGTAAGTCCAGATTTCAGCACGGTAAAGGGAAAGCGAGTGGCCGAGAAGGAAGACCGCGCATGCGTGAAAGGCCTGGTTTAGGAATGCAGGCATCCTCGAATGCCCACGCAAGCGACGGTGGCGGTTTACAGTTTTCCACTTCAGATTCGTCGTCCGTACCGTCGTCTTCGCTCGGCGGAGTGTTCGGCTCTGCGGCGAGAAACGATCGAAAATCGGCTCTTAAAGCTGCTTTCCAGGCCCAGTACAAATCTCACTTCTGCGCTGCTTCTTCATCCTCTTCAAACAAGTGGGATGCCACGAGCCAGCATAGTACTGCCAAGCCACCCGACCGACCCACCAAGCCCTCGAAACCTCCTGTCAAGAAATCGAGATGGGATCCCGTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q810A7	ATP-dependent RNA helicase DDX42 OS=Mus musculus OX=10090 GN=Ddx42 PE=1 SV=3
Q5F485	ATP-dependent RNA helicase DDX42 OS=Gallus gallus OX=9031 GN=DDX42 PE=2 SV=1
Q86XP3	ATP-dependent RNA helicase DDX42 OS=Homo sapiens OX=9606 GN=DDX42 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005917 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12835	DDX42, SF3B125; ATP-dependent RNA helicase DDX42	EC:5.6.2.7	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.