Gene detail

Detailed information of XP_074624809.1 in Acropora palmata

Genomic Location: NC_133887.1:9627954...9653085
NR annotation: XP_044178037.1, arginine-glutamic acid dipeptide repeats protein-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074624809.1

ATGACGATGGGAGGTAGAAGCGAAACTGGTTCGGAATGCAACAGCCTGACAAATTCAGACGATAAACAGAGGGCAAAGAAATTGACTGGCAAGACAAATGGCGATAAAAAATCTGAAGCGAACGAGCCATCCTTGTTGACATATACATCCGATGAAAATGTTCTTTACGAGCCAGGAGACTGTGTGTATATTGATAGCCAGCGAGCAGATGTGCCCTATTTTATCTGCGCTATCAAAGAATTTCGTTCGAGTAAACGTGATTCGCAGCTTGTGGTTGTCAGATGGTATTATCGCCCATCAGAGGTTCCGGAATCTGTTTATCAGCTGCTTGTTCAGGACAGAAATGCTGAAAATGTTTCAGGTTCAGGTGATCATATTTTGGAAGATGTTGCTGTCAAGGAGCGTGAATTATTCATTTCCGATGCAACAGATGAATACCCTGCATCTGCAATCAAGGGAAAGTGCAAAGTGCGTCCTTTTGTTGAGATAGACTCTGTGAAAGGATATATTCAGAAAGATGATGCATTTTTCTATGTACTTGGCTACAATCCAGAAACAAGGCGTTTAGCTAACACCAAAGGGGAGATAAGAGTTGGAGGAAGTCATCAGGCTACCCTTCCACCCTGCTGCCCTTTTCCTGCTAATGGATTGTCAGGGGAGTTAGAAAACCCTAAAGAAGAACTGGTTTGGAGTCCTTGTCTGGAAGACTATGAGCTTATGATGTACCTGCGGGCTGCCAGGAGCATGGCACAGTATGCCGGCATGTGCAATGGTGGCTCACCTGAAGATGGTTACAAAGCAGTGTCTCAGGATGCAACAACTAGCAATGCTCTTCATGTGCTACATCAGAACAACTATGATGCAGCAAAAGCCTTACAAGCTTTGGTCAAGAAACCCTATCCAAAGGAACTTGAAAGGAAATGGTCTGAGGATGAGATGAAAAAGTTCGTGAAGGGACTGAGACAATACGGAAAGAACTTTTACAAAATCAAGAAAGAGCTCCTCCCTCATAAAGAAACGGGTGACCTGGTCGAGTATTATTACACGTGGAAAAAGACTCCCTCTGCTCTTAGCTCAAGGCCTCACAGACGCCGCCGACACAATGTTCTCAGACGGAAAGCACTTCCTAGATCGACTAAAAGTATCGTCAGTGAATTTGTTGACCTCAGTTCTTGTAGTGAAGATGATTACGATAGCGATGAAAGCGACAAGGCCTTGAGATTATACTGCTGTCGCCATTGTTATTCAGCTGAATCTCGTAGCTGGCATCATGGCAGCCAAAACAAGGTCATATTATGCGACGATTGTAGAATTTACTACAAAAAGTACGGCAAGCTACCCACGATAGATGAAACACGCGAACCTCCATCATGCATGTTTAAGGTTGGGGTGGAGAATCAGCGAAGAGAGGAAGATGGATACTTGGTCCATGGCAAATTGGCACTGCGCAGTCGAAGGGCCATTCCACCAGTGCAGACTACTCTGCGCTCCGGAAGAAACAAAGCTGATAATCCTGTGGAAGGAGTTTCGTGTGAATCTTCGGGTGGAAGCCGAAGATTGGCCAAGATAAACAAGGCGCCTTCACCATCGAGCGGAAGTACTTCGAGCACAGGAAGTAGCGGAGGAAAGGACAAAGTTAAAAAGGGAAAATTAAAAAAGGGTAAAAAGCGTCGACGTGATCAGTCACCAGGCGAAAACCAAGCAACAGACAAAAGAAAGAAAACACCCGCTCAGGATTCAGACGAGGATGCAAATGACAACGCAAGCGACACTAGCAGCACCACTGGGGGTAGGGACAGTGTTGTACCCGATCACGAAGCCAGCAGTGTTTGCAGCAATAGCAGTAATACCAACGATGATGCAGCCAGTAACCGCTCTTGCTCGCCAGCCGGGAGCAGACTGGAGCCGCCTGCGCCTCTTCCTCCCAATTTTAAACGCCTTTTCTGCGGCGAGGAAGGAGAAAGTTGCGTGCGCACTGACGTAATCTTCGTGCATCCCGATAAACCGAAGAAGGAATCGACTCCCCGAGAAACCACCTGTTGCAAAGAGTCATCTTCCACGAAAACCGAGGCGAGCGAATCTTCGTCATCCGACGTCGCTAAAATTCGTTGCAGTTCCAACAAGTCACCGTACGACACACCGGCTACCATCACGTCACACTACGAGTCGTCGTTGCGCATGATGGCTCAAGGACAGTACCATTTGTACCCACCAAATCTCCCTGCGGGAATGTCGCCCCAGGGAATTCCTATACCTGGATTTCTACCTCATGGTGTAGGTATAGATTACCGGATGCCGCCATTTCACATGTTTCCAGGAGTCGGGATTATTCCCGGTAGCGTATCATCCCGGGACACGAAGTGTGCCGAAGGATTTGAACAATGGTATGCTCCATATCGAATGGCTCAGTTACAATCGGCAGGTCATCATATTCCTGCCATCTCGTATCTCCAGGGGCAAGGTCGGGCGCATGACCAAGGTACTTTAGATTCGAGGAGCCCTGCTCATGAGGCACTTATCAAGGGAGGCACAGGACGCGTTCTTCCAAATGATCCAGTATCGGAACTTCAGTATTATGGACCTCAGCACCATTCGCACTCTCACCTTCACACGCACTTTCACATTCACCCACACGAACAGCAACACTTACAAAATCTACAGGCTGCTGGTAACATGTCAAACATTGACCCAGCTTATCTTCAACATCCGGTACTTGCTGCTTGGAGAAATCATCCCTCTCTATGGCAACATTCCGAATTGATGCATCTCCACGGTAACAGCGCGCGCAGTATTTTTCCTGAGGAGTTAGCGCATGTTCAGGGACTTGGCTCCACACCGCTGGATCGACAATTGCAGCATCAACTGTTGTTGAATCAGCAAAGCAAATATCATTCGCAGCAACAGCACATGTTAGCGCAACAGGAGGAGCGATACTGGAGACAACACAATCGATCAGCACAACAAAGACTAGAGAGCGAAAAAATGAACGATCACGTGATTTCCAGTTTGTTTAAGAAAGATCATCGAAATCTTCAAAGTCCTTCGCAACTAGAAAATGTAGTGAAGAAGAGTTTGGATAGCACAGGAGCTTACACATCGCCATCAAAGAAGCCTCCAGTCACAATAGACCTTTCAGATGATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80TZ9	Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus OX=10090 GN=Rere PE=1 SV=3
Q62901	Arginine-glutamic acid dipeptide repeats protein OS=Rattus norvegicus OX=10116 GN=Rere PE=1 SV=2
Q9P2R6	Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens OX=9606 GN=RERE PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003001 (this species only)
Transcription factor family	MYB · all TF in this species
Transcription factor family	zf-GATA · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01448 all species →	ELM2	ELM2 domain	Family	Interproscan
PF01426 all species →	BAH	BAH domain	Domain	Interproscan
PF00320 all species →	GATA	GATA zinc finger	Domain	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000949 all species →	Domain	ELM2 domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan
IPR001025 all species →	Domain	Bromo adjacent homology (BAH) domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR000679 all species →	Domain	Zinc finger, GATA-type	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13859 all species →	ATROPHIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05628	RERE; arginine-glutamic acid dipeptide repeats protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.