Gene detail

Detailed information of XP_074624977.1 in Acropora palmata

Genomic Location: NC_133887.1:20309011...20329682
NR annotation: XP_029196603.2, neuralized-like protein 4 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074624977.1

ATGGCGGAGTTTCATCGTTGCCACGGGTCTCTTGTTTTTCTCAGCAATGGAAACCGAACGGCTCGGAGACGAAGCTCCGCCGCAGAGTTCAACAATGGTCTAACATTCAGTAAGACTCCACTAAAGGACAATGAGATATTTGAAGTTCTGTTAGACCGAAAAATCGGGAATTGGTCGGGGTCTTGGGCCATTGGTGTGACCTCTGGTGACCCGAGCTTAATGGAAATTCCTTCAAGCTCTACGGGGCTGAAAAATGGTTCATGGATTATGTCTGGTAGGACCATTTTAAAGGATGGCTCTTCTTTCTTGGAAGATTATGGCCAGGATCTGGACGAGCTTAATTCGGGTGAGAGGGTTGGGGTACAACGAAAACTGAACGGTAGTTTACATTTCTTTGTCAATGGCGTTGATATGGGTCTAGCAGCCTCAAACGTACCTCAGAAAGTTCACGCTGTTGTTGATTTATACGGAAGATGCGTTGAAGTATCAATTTATGAGCCCTACGATGGTAGCACTGGTATGAGTTCACCAGCAGCACAGTCAACTCCTTCCACTGCCTCAGTGCACTTTCATCCCCACTGTGGCTCTCTCATAAAGCTTTCAAACAATAACAGAACCGCAGAACGAGAAAGACCCACAGAAGAATTTAAGAATGCTGTGACTCTCACCAATATACCCTTAAGAGATGATGAATTGTTTGAGGTTGAAATAGAATCTGTTACAGAATTGTGGGCGGGTTCTATCGAAGTTGGTGTCACCAGTCATGATCCAGAAAACATTGTACTAGCACCAACCATGACAAGCATGCCGTCAGGGACATGGATGTTAAGTGGAAGATCAGTCATCGTGAATGGCCAAGAAGCTAAAAGGGATTACTCAAGTATAAACCTCGAAACACTGAAGGAAGGAGACAGGATTGGAATTCTCAAGAAGAGCTGTGGTTCTCTTCATTTCTTTATTAATGGCACTGACCTGGGAGAAGCTGTCAGCAACCTCCCAGTGGTTGTTTATGGAGCGGTTGATATTTATGGTGCAGCTGTCAGGGTGTCCATTGTTTCCAGGGAAGAGGAATGTGAAAGAGCTATTAATACTTCAAGAAACCCATTGGTATTTCATCCCCGCTGTGGCTCATCTGTGTCCTTATTTAATGGATTTCGAAGTGCACATAGACCAAGAGCCAATGAAGAATTCAACAATGCTGTTGTCCTTACAAGCCGTTGCCTTGGCCCTAATGAACTCTTTGAGGTGTGCGTTGATCAACAGGTCACTAAATGGGCAGGGTCAGTAGAGATTGGCATCACTACTCATGACCCAGAGACCCTAGAGTTCCCGTCAACAATGACTAATATGCAACTTCCAGGAACTTGGATGATGTCTGGGGGAAGCCTGGTGTGTGATGGAGTGACAGTGATTGAAGATTACGGACCATCATTAGATGAAATTAAGGTAGGAAATGTAATTGGAGTTATGCGGAAAGAAGATGGATCACTGCATTTCTTTGTGAATGGCACTGATGTGGGCTGCGCTGCTACAGGGGTTCCTGCTGCTGTTTATGGTGTGCTTGATTTGTTTGGTCGGTGTACTCAGGTCACTATCGTCTCTAAATCAGAAGAAAGTACAGGAGTTGAAATTACTGGCCCAATGAATGATGTCCCAGAAGTCTCTGAAGTGGTTATTGTTGCTCAAGAACGACAACCTGAGGAATCCACTGCCATAATTCTCCCCCAAGATTTGAGTCCATCAAACAGTGTAGTAAACAACGGTTTCAAGTTCAGTTCTTTTCATGGTTGTCAAGTTGCAGTGAGTGCCGATTGTCGCAGTGCTGTGCGGGTTAATCCTTTGTGCGAATTTAATAATGCGATTGTGATGAGTCACAGACCTCTTGAAGATGATGAGATTTTTGAAGTGATTGTTGAGAAAGTTGTGACTTGCTGGTCTGGGTCCGTGGAAGCAGGAGTGTGTATATCCCCACCTGAACAAGTGCAGTTTCCATGTACAATGACTGACCTTGCCAGTGGTTCGTGGATGGTATCTGGGTCATCTGTGGTGCACAATAGTGCCACAATCCTCAGTGGGTATGCCTGTGATCTCGATAATCTGGAGGAGGGGTCACGTCTGGGATTGATGCGCAAATCAGATGGGTCCCTGCATTTCTTCATCGGTGGGAAGGATTATGGTGCAGCTGCTACAGGTGTTCCATCAGGTGTCTACGCTATGATTAATTTGTATGGCCAGTGTGTTCAGCTATCTGTGTATGACCAGGACTACAGAGGAGCTGCAGTGATAGCACTCCCTGAACAACAACAACAGCAACAACAACAAGCTGCAACTGAACCAGTTTCCACAACAGATGGAATAAACACTGATAAAGAAAAATGTGGATTCCACTCTTGTTGTGGGAAGAACATCAGTCTTGTAAACAGAAAGATGACTGCTGAAAGGTCACAGGGGTTCAGCCATGCTCTTGTGTTTAGTGCAAAGTCTATGGAAGATGATGAAATATTTGAGATTGTCATCGACAAAATCATAGGCAGTCAGTGGTCAGGATCATTAGCTGTTGGTATCACGACAAAGTCCATCCCCCTACTGACTGTCCCTTCATCAGCCCTTGAACTAAGAGATGGAACGTGGATTATGACTGGGTCATGCATCATGAAGGATGCTGTTGTAATTAAGGAAAATTATGGGCATTGTTTGGATAGGTTGCAGCCTAAAACAAAGATTGGAGTCCAGAGGCAAAGAGATGGAACATTTCATGTGTTCCTTAATGGTGAAGACCAAGGTGTCGCAGCTATGGATGTTCCCCAAGGAGTTTATGCTGTTGTTGATGTCTATGGTATGACACAGATGATCTCCATTTCAAGTCCCCCCACTGGTACACAACAACAAGAAGTTCCTCCCAGAGAATTAGAGACATCAGAACCGCAAGTATCTGAGGTAAAAGAAGAAGCTGAAGAGGATACGATGGGATCCACCATCAGCTTGCAAAAATTTCTGTTCCACAAGAACTGCGGCCAGTTCATTGCACTGGACAGTAATCGCACAACTGCAAGGAGAGTGGACAGTTATAATCATGGAGTAGTGTTGAGTGAAAAGCCGCTGCCAGATAATCACTTGTTTCAGGTCTGTATTAGGAAGTTGAACAGCCGCTGGACAGGGTCTGTGATGATCGGTGTCACTGCTCAGGACCCAGACTCCTTAACAAGCCTGCCGAGCACAGCCAACAGCATCAAGATTAGCCCTTGGATAGTAGTCAAAAATGCAGTGTATGTTAATGGAAATAAGGTAAATGATAACTTGCGTCGTAGTCTGGACAGCCTACAAGAAGGAGATACCTTGGGAGTACTGATTGACAAGAAAAGCCGATTACACCTGCTGATAAACGGAGAAGATCTGGGACCTATTGCCCAGGCGATCCCTGCCAGACGATTTGCTGTTCTTGATTTATACGGGTGCTGTGAAGAGGTGTCTATCGTAACTACTGATCATTTGGATCGTGGGCGTGTCTGTATGGAAGAAACAAACGCCGATAGAAGTTCAACTGAGCACAGCAAAGGTCCGTGTGATTACAGGCAGTTGTGTGACAGATTTCGCGCGAGTTTAGCCATTCCAGATGAATACTTTAATGGAGATTGTAAGTTGAATGTTTGCTATTGTCAAGCATGTCACGAAGCCCGCGGTGAGAAACGCTATGCTGTCAGTGGTGATCCACCATGTCGTTATGCGTTACCGCTTGGTTGGTGTCGGTTTGCTTTGAGAATGCCCCCTCGAGTTGAAGGATATCAGGTGTTTGAAAAATGGCACGTCTCCTTTTATGGCACTCTGATTGGACGGCTCAGACGAATACTTGATCTTGGAGACATTCCACTGCAAGTTTGTAATGGTCAGCGGCGAAATAGCTCGTCAAATAAGGAGAACGATGTGCCTCAGTTATGTGTATCACCTACTCTGCTTTGCGCTTGTGAAGCACAATCCAAGAGGCAAGAGTACAGGGACGGTACCACTGGTAAAGTATGTAAGGTTCGAGTCGCCTTACAGCTCCTCGTCAAACCAGGAATGTACAGAACTGGTCCCAGTCATCGACAGGTGGACGTCAATGAACTCCTGGATCAGAATCTCGGCACGGAAAATGTCGAGTGGTACCTGTTAAATCAAGGGTCAGTCGTGTTGACTGCACTGCTTATCAAAATCGAACCAATATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L0Y2	Neuralized-like protein 4 OS=Xenopus tropicalis OX=8364 GN=neurl4 PE=2 SV=1
Q5NCX5	Neuralized-like protein 4 OS=Mus musculus OX=10090 GN=Neurl4 PE=1 SV=1
Q96JN8	Neuralized-like protein 4 OS=Homo sapiens OX=9606 GN=NEURL4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006128 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07177 all species →	Neuralized	Neuralized	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006573 all species →	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR037962 all species →	Family	Neuralized	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12429 all species →	NEURALIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16777	NEURL4; neuralized-like protein 4	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074624977.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

64TPM > 0

2Conditions

22.9Max TPM

10.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	34	9.48	18.32
all_coral_tissue · baseline	38	30	12.51	22.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.32
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.20
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.16
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.22
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.88
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.66
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.34
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.69
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.29
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.85
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.84
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.60
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.07
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.49
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.35
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.27
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.78
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.71
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.43
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.28
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.14
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.02
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.86
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.74
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.78
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.34
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.79
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.79
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.88
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.46
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.16
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.91
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.94
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.68
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.86
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.03
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.76
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.87
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.60
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.53
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.22
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.88
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.75
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.04
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.28
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.10
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.87
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.59
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.37
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.99
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.78
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.77
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.65
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.42
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.19
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.78
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.65
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.40
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.24
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.84
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.50
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.48
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.07
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	10.69
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.