Detailed information of XP_074624982.1 in Acropora palmata

Genomic Location: NC_133887.1:3741467...3786923
NR annotation: XP_044170423.1, unconventional myosin-IXAa-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E7EZG2Unconventional myosin-IXAa OS=Danio rerio OX=7955 GN=myo9aa PE=3 SV=1
B2RTY4Unconventional myosin-IXa OS=Homo sapiens OX=9606 GN=MYO9A PE=1 SV=2
Q63358Unconventional myosin-IXb OS=Rattus norvegicus OX=10116 GN=Myo9b PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002346 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00788
all species →
RARas association (RalGDS/AF-6) domainDomainInterproscan
PF00612
all species →
IQIQ calmodulin-binding motifMotifInterproscan
PF00620
all species →
RhoGAPRhoGAP domainDomainInterproscan
PF00063
all species →
Myosin_headMyosin head (motor domain)DomainInterproscan
PF00130
all species →
C1_1Phorbol esters/diacylglycerol binding domain (C1 domain)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001609
all species →
DomainMyosin head, motor domainInterproscan
IPR000159
all species →
DomainRas-associating domainInterproscan
IPR036961
all species →
Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000048
all species →
Binding_siteIQ motif, EF-hand binding siteInterproscan
IPR002219
all species →
DomainProtein kinase C-like, phorbol ester/diacylglycerol-binding domainInterproscan
IPR000198
all species →
DomainRho GTPase-activating protein domainInterproscan
IPR029071
all species →
Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR008936
all species →
Homologous_superfamilyRho GTPase activation proteinInterproscan
IPR020454
all species →
DomainDiacylglycerol/phorbol-ester bindingInterproscan
IPR046987
all species →
FamilyUnconventional class IX myosinInterproscan
IPR046349
all species →
Homologous_superfamilyC1-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46184
all species →
UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003774
all species →
Molecular Functioncytoskeletal motor activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0016459
all species →
Cellular Componentmyosin complexInterproscan
GO:0007165
all species →
Biological Processsignal transductionInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0000146
all species →
Molecular Functionmicrofilament motor activityInterproscan
GO:0005096
all species →
Molecular FunctionGTPase activator activityInterproscan
GO:0005884
all species →
Cellular Componentactin filamentInterproscan
GO:0035556
all species →
Biological Processintracellular signal transductionInterproscan
GO:0051015
all species →
Molecular Functionactin filament bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10360MYO9; myosin IX-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074624982.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
75TPM > 0
2Conditions
51.8Max TPM
20.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 39 18.03 50.28
all_coral_tissue · baseline 38 36 23.82 51.81

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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