Detailed information of XP_074625075.1 in Acropora palmata

Genomic Location: NC_133887.1:9035018...9108589
NR annotation: XP_029187171.2, vacuolar protein sorting-associated protein 13D-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5THJ4Intermembrane lipid transfer protein VPS13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2
Q9VU08Intermembrane lipid transfer protein Vps13D OS=Drosophila melanogaster OX=7227 GN=Vps13D PE=1 SV=3
Q54LB8Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001911 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00627
all species →
UBAUBA/TS-N domainDomainInterproscan
PF06650
all species →
VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF16910
all species →
VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan
PF16908
all species →
VPS13_ext_choreinVacuolar sorting-associated protein 13, extended-choreinRepeatInterproscan
PF12624
all species →
Chorein_NVPS13-like, N-terminalDomainInterproscan
PF16909
all species →
VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015940
all species →
DomainUbiquitin-associated domainInterproscan
IPR009060
all species →
Homologous_superfamilyUBA-like superfamilyInterproscan
IPR009543
all species →
DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR031642
all species →
DomainVPS13, middle RBG modulesInterproscan
IPR041969
all species →
DomainIntermembrane lipid transfer protein VPS13D, UBA domainInterproscan
IPR031646
all species →
DomainVacuolar protein sorting-associated protein 13, extended choreinInterproscan
IPR026847
all species →
FamilyVacuolar protein sorting-associated protein 13Interproscan
IPR026854
all species →
DomainVacuolar protein sorting-associated protein 13-like, N-terminal domainInterproscan
IPR031645
all species →
DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166
all species →
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0006623
all species →
Biological Processprotein targeting to vacuoleInterproscan
GO:0007005
all species →
Biological Processmitochondrion organizationInterproscan
GO:0019898
all species →
Cellular Componentextrinsic component of membraneInterproscan
GO:0045053
all species →
Biological Processprotein retention in Golgi apparatusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19527VPS13D; vacuolar protein sorting-associated protein 13D-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074625075.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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