Gene detail

Detailed information of XP_074625243.1 in Acropora palmata

Genomic Location: NC_133887.1:3895945...3908837
NR annotation: XP_029193673.2, transient receptor potential cation channel subfamily A member 1-like isoform X2 [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074625243.1

ATGTCCAACTCGAGAACGCAACATTATCGAACCTACTCAGAGTCGACACAAGGCAGTCCCAAGCCGTCCTCTGCAGGAACACAGAGAAGCATGTCATCACTGAAGAAAATAAACCCTTGGCTTGATGACGGAGGCTCATTGGAACTTATTTCCAATCCCGGAAGCAGCAAAGGACAACGAAAGTTTCCTCCTTTAGCTAATGGGAACAGCGTTCGTCCACATTATCCTTCGGCGCATGATAAGTCGTCAGAAGCTGAGAATAACACAGGTTTGCCTTCTCTTCATCGAGCCGTTCGTGCAAACTGTCATTGGTCAGTTACTAAGCTGCTGGACGAAGGTGCTGATATTAATATAAAGGACCAGGACGGGCTCACTCCTCTGCATGCTGCTACAAGGTTTGAACGAGAGAACATTGTCAAGCTTTTACTTGAGAGAGGAGCTGATCCTACAATAACTGCAGATGACAATGAAGTTCTTTCCCCACTAAAATCAGCTGCTCGAAGAGGGAATAAGGAGATATGCAGACTTCTATTACAGGATTCTAGGGTGAAGGAAAGGATAAACGACGGAAAAAGAGTTACTCCGTTGACATTTGCCTGTATGAGCGGAAGTCGAGAAGTATGCGACTTATTTTTAGCAAATGGCGCCGATTTGGAAGCAAGTACTACTCTCTGGAGTTCTCTCCATGTCGCAAGCTATGTGGGCAGTGAAGATGTCTGCGGACTCCTTCTCGAGAGAGCTTCCAAGCAATTGCCAAATTTTGCTGAATTCCTGGACCAGGAGAGCCCTGATGGATTTACAGCTCTCCATTTCGCCTGCGTCGGAGGGCATGAAAAAGTAGTTGATTTATTATTACGTCACGGTGCGGACCACGAAGCATACACCCTTGTATCGTCTGCCTCCCCGCTCCATCTTGCAGCAAAGAGTGGGCACCTATCTTCAGTTGAACTTCTGATACTTCATGGCGCGGAAATCGGCTGCAGAGATGGAAAGCTTAGAACACCATTGCACAGTGCTGCAACATTCAATCACGGTCGCATAGTGGAGCTCCTTCTCGACTCTGGTGCTGATCCAGAGGCCTTAGACGTCAATGGAATGCCGCCGTTTTTGATGGCGGTAACTCACGGATCCTTGGATGCCGTCAAAATGCTGTTGAAACGCGGAGCTAACATAACAGCTACTGATGCTTCGCTTAGCAGTGCTCTTCATTTGGCTATTTCGTACAGGAAGCCAGAGATAGTGAAACTGCTGCTACAAATGGACAAAGAACATACTCTTTTACGAATGAAAGACAATTACCTAAAAAATATTTTCCATTTGGCAGCTGGATTAGAGACTTCGGAGATATTAGAAGTCATTCTGGGAGCTGTAAAAGTATGTGAAGGCGAGCGGGACATAAGAGAGAGGCTACCCCTTCACATTGCCGCTGAAGCAGGTTCTCTAGATTGCGTATTGACCCTTTCAAAACAATGTCGATTTTCCTCGCATTTAAATGAAAGGGACGAGCATGCAATGACACCGCTTCACCTGGCTGCCAACAATGGTCATGAAAAAACTTGTGAACTCCTTATTGAAAAAGGTGCAGATGTAACAATAAAAGAAAGGACCCATTCCACGGCTCTTCATCTAGCGGCCAAAGCTGGCTCATTAAGGACAGCACGAGCTCTACTGAGTTGTCTTTTGCCAAGCACAATGGACGAAAGGGACGATGATCAAAACACTCCTCTTCATATAGCCTGCAGATATAATCGAGTCGATGTGGTGCGGTTCTTATTGGACAAAGGCGCAGACGTCACCGCTAGAAATGCCAGAAATATGACATGCCTGGACATAGCAATTGAGTGGGAATATGAAGATGTAGCAAAGGCACTCGCCCGTCATCCACGGTGGGAAGAGGTACTACAGCCATCTCCGGATTCTGGTGTTTTTCCAATGACGCAGCTTATAAAAAAGCTCCCAAACGTGGCAGAAATCGTTCTTGACAATTGCATCACCATCTCTCCCCTTCCTCCCTCTCATGAAGACTTTTCTGTCACATTCAATTTTCGTCATTTAGATCCAGAAAAGGATTGTACTTCCTTCATTCCAGCGTCCATGGCGAAATACAGACGCGAAAAGCTACTCAATCATGGAGCCACTCAAGCATTTTTGCGTTACAAGTGGATGGTGCTGGGAAAATTTTTCACTCTTTTCAACACTTTAGTCTTTATTGCTTTTGTTGCCTTATATTCGTGGTTCGTTGTTCATGAACGAGAGACAAGTACACTCTTCTCGCATTCCAGTTCCTCACCAGTTATATCTCGTACAAAACATACTTCGAAGTCTGCTTCAGGAACAATCTTTGTCTTTGTGCTTTTTCAGTTTGTTAAGGAACTAGTCCAGTTCTCGTGGCTACGTTTTGGTTACTTAAAGGATGCCACGAATATGTTCGAGCTAGTGATGTACGCCATGGTTTGTGTTTTTACCATTCCTTGCTTTTTTGGAGAAGAAATCTACAGCGAAGAAACGCGATGGAATGCGGGATTAACTGGACTTTTTCTCTGTTATTTCAACTTGACGTTACATTTCCGAAGATATGGTGGATTTGGTTTGTACGTTACTATGTACGTCGAAGTTCTCTGGACGTTTGTCAAAGTAATATCAACATTCCTCGTTGCTTTGATTGGCTACTCCTTGGTATTTTACATTTTACTTGGCAACCAGGGAAATTTCTCAAGCTTCTTACTTGCTCTTGGAAAAATCCACGTGATGATGGTTGGAGAGCTGGACTACACAAACATGCTAGTGGACAGAATCGTGAACAATGAAACTGTTCCCGGTACAGATCTGTTGTACGTGCCGTTACCAGCTCTGACGTCCTTGCTCTTCTTCGTTTTCGTTTTAATGATCTCGGTTGTTCTTGTTAACTTATTGGTTGGTCTGGCAGTTGGAGACATTGAATCAATTCAGCGGACTGCAAGCTTACGAACGCTGATAGATGACGCGCTGTTAATTGGAGGAATTACGAGATCTTACCCAGCATTCATTCTGCGCCGTGTGCACAAAGACTCTCTGAAAATATTTCCAAATCGAAATACGATCGTTAAAAGGATCGCCCTTTCTGGTACCGATATTATGGATCAAAAGAATTTTATGGAGAAGTTACTTGGTTATCGATCTGAGGTGAGAAACTCGCTCGACGTGTGGTGCGATGAAGATAAAAAGCAACGCCAAGAGCAAGAGAGAGTTTTACAAAAGCTGCAGGCTACAGTGGAGGCACAAGGTAAAATTCTCAAGGCGATGGCTGAGCGATTGAACATCACAGACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BLA8	Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus OX=10090 GN=Trpa1 PE=1 SV=1
Q6RI86	Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus OX=10116 GN=Trpa1 PE=1 SV=2
O75762	Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens OX=9606 GN=TRPA1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13606 all species →	Ank_3	Ankyrin repeat	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052076 all species →	Family	Transient receptor potential cation channel	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47143 all species →	TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04984	TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.