Detailed information of XP_074625892.1 in Acropora palmata

Genomic Location: NC_133887.1:3635240...3657798
NR annotation: XP_044172939.1, kinesin-like protein KIF20B isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q29RT6Kinesin-like protein KIF20A OS=Bos taurus OX=9913 GN=KIF20A PE=2 SV=1
P97329Kinesin-like protein KIF20A OS=Mus musculus OX=10090 GN=Kif20a PE=1 SV=1
O95235Kinesin-like protein KIF20A OS=Homo sapiens OX=9606 GN=KIF20A PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002573 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00225
all species →
KinesinKinesin motor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036961
all species →
Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR001752
all species →
DomainKinesin motor domainInterproscan
IPR047149
all species →
FamilyKinesin-like protein KIF11-likeInterproscan
IPR019821
all species →
Conserved_siteKinesin motor domain, conserved siteInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47970
all species →
KINESIN-LIKE PROTEIN KIF11Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003777
all species →
Molecular Functionmicrotubule motor activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0007018
all species →
Biological Processmicrotubule-based movementInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0005876
all species →
Cellular Componentspindle microtubuleInterproscan
GO:0008574
all species →
Molecular Functionplus-end-directed microtubule motor activityInterproscan
GO:0051231
all species →
Biological Processspindle elongationInterproscan
GO:0072686
all species →
Cellular Componentmitotic spindleInterproscan
GO:0090307
all species →
Biological Processmitotic spindle assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10402KIF20; kinesin family member 20-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074625892.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
54TPM > 0
2Conditions
19.1Max TPM
5.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 28 5.16 19.12
all_coral_tissue · baseline 38 26 6.84 14.58

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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