Gene detail

Detailed information of XP_074626697.1 in Acropora palmata

Genomic Location: NC_133887.1:21260469...21263139
NR annotation: XP_015774487.1, PREDICTED: uncharacterized protein LOC107352686 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074626697.1

ATGGAATTCATTGCTCTTAAAGTCGCTATTGTTCTCCTTGCGCTTTGTCTACAAAAGCCCGGTCCAAAATCGAAATTAAAAGATCACCAGGATTGTTTGGCAAAGCGTCTTGCTTTATGGAAGAAAGGCGAGGTTGATAGTATTCTCCGTGAAGGACGCATGATACAGAGACGTCTTGGAAACTCCCGTAGGGCGACAGACCCTCCAAATAGGGCAAAGATTTTTGCAAATCTTGTGATGACAGGACAAGTCAATTCAGCGTTACGATATCTAAGCGATGATCAAGGTGGAGGGATCTTACCCCTTTCGGATGACGTCATGGAGCAGTTGAAGGAAAAGCACCCTGAGCCACAGGGTGTCCAATTAGGGTCTCTCCTGTTTGGCCCTATTGAGGACGTTCCCGACACTCTGTACTATGAGATCAATGGAGACATGGTCAGGGACGCCGCTCTAAGAACTAAGGGCTCGGGCGGGCCCTCTGGTGTAGATTCAAACGGCTTCAGAAGAATTCTTACTTGTAAATCCTTTAAGAGATCAGGAACAGAACTCTGTGAAGCTATAGCCAGCATGACCAAACGTCTATGCACTGAGTATGTCGATCCTCGGGGTCTGGAAGCAATTTTAGCAAATCGGCTTATTCCCCTCGACAAAGGAGAAGGAGCGGTGCGACCCATTGGAGTAGGCGAAGTGTTAAGGAGGATTATGGGAAAGTGTGTCACGAAGGTCACCAAACCGGATGTTATAGATGCGAGTGGCTCTTTACAAGTGTGCGCTGGTCATAAGAGTGGGAGCGAGGCGGCCATTCACGCAATGCGGGAACTTTTTGAACATGACAACAGCGACGCGAATCTGCTTATAGACGCATCGAACGCCTTCAACTCCTTGAACAGAGCCGCCGCCCTGCATAATGTTAGAGTGTTATGCCCATCAATAGCGACTTACGCAATAAATACTTACAGGGAGCCCGCACGCCTCTTCATTGTTGGCGGACAGGAACTGAGATCATCCGAAGGCACTACACAGGGTGACCCACTTGCCATGAGCCTATACGCCATCAGCCTTCAACCACTCATCACGCGACTACAAGTCAAGAGCGCAGCTAGCCAATGTTGGTATGCGGATGACGCAACTGGGTGCGGCTCCCTAGGGAATGTGAAGACATGGTGGGACGAGCTCATGGTCAGTGGGCCTCCACTGGGATATTTCCCAAACCCCCAAAAATCTTGGCTCATTGTAAAACCTGAAAAAGAGCGACCTGCTAAGGAGATCTTTAGAGAGACAACCATTAACATCACAATTGAGGGTCGCAAGCATCTCGGAGCGGTTCTTGGTTCCAGAGTTTTCTTTGAAGAGTATGTGGGCGAAAAAGTTGAGGAATGGGTTGCACAAGTAACCAGACTGGCGGAATTCGCTACAACACAGCCTCAATCTAGTTATGCAGCTTTTGTGTTTGGACTAAGGCACCGTTGGACATATCTTTTAAGAACTCTGCCAGACACAGCCCCTTTTCTTGAACCCCTAGAGCGTGCCATAGCGGATTTGCTTGTGCCGGCTATCACCGAGCATGTTACCACACAGGAAGAACGGGATCTTTTGGAACTCCCAGTTCGCTTAGGCGGGCTTGGGCTAGTCAATCCAGCCAGAACCGCATCACAAGAGTATGAGGCGTCTATTAAGATCACAGGCCCTCTTGTGCGGCAAATTATCAAGCAAGCCCACGAGCCACCGGATGAGACGGAAATTAAGACCTTGCAAGAGAGTGCACGAAGAGAAAAAGATGAATGGTTGAAGATGCGGTGTGAGCAAGTGAGGGAAGCCTTGCCTAGCAAAACTGAACGCGTGGTAGAGCTAGCTACGGAGAAAGGAGCCTCGAATTGGTTGACGGTGATCCCGATAAAGGAGATGAATTTTAACTTGAATAAAAGAGAATTCAGAGATGCAGTCAAGCTAAGGTATGACTGGGAGATCGCCGACCTACCGGCCATGTGCACATGCGGGGACTTATTTACCGTTGACCATGCTATGGTCTGCCGGCATGGAGGGCTGATTATTCAGAGGCACAATGAGATTAGGGACTTAGAGGCGGAAATGTTGCGCATGGTTAGCACCGACGTAGAGATAGAACCAGTCCTTCAGGAAATCACTGGGGAAGAGCTAAATAGAGGCGCAAACAGAGCGCCTGATGCCCGACTAGATATTCACGCTCGCGGGTTTTGGGACAGACAGCAATCTGCGTTTTTCGATGTTCGGGTGTGCCATCCAAACGCAGATTCGTATCGAGAACTGTCTCCGAAACAGATATTCCAACTACATGAAAATGAGAAGAAGAGGCAATACAGCAGGCGGGTTTTGGAAGTGGAGCAAGGGACATTCACACCTTTAGTCTTTACAAGCACAGGTGGAATGGCCGATGAATGCAAGAGATTCCATAGCCGCCTCGCAGAGCTACTTGCGTTAAAGAAAGGAGATGACTACTCTACAACCATATCTTGGATAAGGGCGAAGGTATCCTTTGCCATTCTACGATCAGCCTTGCTCTGTCTCAGAGGAACCGGGAGAAAGAGAAGAGCAGCCAACATATCTGACATTGACATCACATCGGAAAGTGCGCAAGCCAGAATTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000049 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_074626697.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040260 all species →	Family	Replication factor A protein-like	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13989 all species →	REPLICATION PROTEIN A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005662 all species →	Cellular Component	DNA replication factor A complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074626697.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074626697.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

74TPM > 0

2Conditions

2.6Max TPM

0.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	40	0.31	1.15
all_coral_tissue · baseline	38	34	0.42	2.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.15
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.75
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.70
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.64
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.56
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.52
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.50
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.50
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.49
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.46
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.45
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.44
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.44
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.41
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.40
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.39
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.39
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.39
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.38
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.37
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.34
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.32
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.30
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.28
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.27
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.25
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.25
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.21
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.20
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.17
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.17
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.17
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.17
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.12
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.12
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.11
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.08
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.07
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.07
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.07
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.57
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.14
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.72
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.64
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.63
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.62
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.57
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.51
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.51
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.49
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.48
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.48
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.46
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.43
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.42
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.41
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.38
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.34
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.33
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.33
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.31
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.27
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.26
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.23
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.23
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.22
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.22
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.19
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.16
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.15
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.11
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.11
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.07
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.05
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.