Detailed information of XP_074628131.1 in Acropora palmata

Genomic Location: NC_133888.1:7305791...7332707
NR annotation: XP_044183459.1, TPR and ankyrin repeat-containing protein 1-like isoform X1 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BV79TPR and ankyrin repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Trank1 PE=2 SV=3
O15050TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=TRANK1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000890 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00580
all species →
UvrD-helicaseUvrD/REP helicase N-terminal domainDomainInterproscan
PF13432
all species →
TPR_16Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR039904
all species →
FamilyTPR and ankyrin repeat-containing protein 1Interproscan
IPR036770
all species →
Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR014016
all species →
DomainUvrD-like helicase, ATP-binding domainInterproscan
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR013087
all species →
DomainZinc finger C2H2-typeInterproscan
IPR002110
all species →
RepeatAnkyrin repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21529
all species →
MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_074628131.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074628131.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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