Genomic Location: NC_133888.1:6610806...6635669
NR annotation: XP_044183526.1, LOW QUALITY PROTEIN: WD repeat and HMG-box DNA-binding protein 1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families
| CDS |
| XP_074628367.1 |
| Protein |
| XP_074628367.1 |
| UniProt accession | Description |
|---|---|
| O13046 | WD repeat and HMG-box DNA-binding protein 1 OS=Xenopus laevis OX=8355 GN=wdhd1 PE=1 SV=1 |
| P59328 | WD repeat and HMG-box DNA-binding protein 1 OS=Mus musculus OX=10090 GN=Wdhd1 PE=1 SV=2 |
| O75717 | WD repeat and HMG-box DNA-binding protein 1 OS=Homo sapiens OX=9606 GN=WDHD1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003464 (this species only) |
| Transcription factor family | HMG · all TF in this species |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12894 all species → | ANAPC4_WD40 | Anaphase-promoting complex subunit 4 WD40 domain | Repeat | Interproscan |
| PF00505 all species → | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| PF20946 all species → | Ctf4_C | DNA polymerase alpha-binding protein Ctf4, C-terminal domain | Domain | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF12341 all species → | Mcl1_mid | Minichromosome loss protein, Mcl1, middle region | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036910 all species → | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR009071 all species → | Domain | High mobility group box domain | Interproscan |
| IPR024977 all species → | Domain | Anaphase-promoting complex subunit 4-like, WD40 domain | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR048591 all species → | Domain | DNA polymerase alpha-binding protein Ctf4-like, C-terminal domain | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR022100 all species → | Domain | Minichromosome loss protein Mcl1, middle region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19932 all species → | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000278 all species → | Biological Process | mitotic cell cycle | Interproscan |
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0006261 all species → | Biological Process | DNA-templated DNA replication | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0043596 all species → | Cellular Component | nuclear replication fork | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11274 | WDHD1, CTF4; chromosome transmission fidelity protein 4 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of XP_074628367.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| all_coral_tissue · exposed | 46 | 0 | 0.00 | 0.00 | |
| all_coral_tissue · baseline | 38 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APALM_TPM,
StringTie quantification over 84 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
