Gene detail

Detailed information of XP_074628461.1 in Acropora palmata

Genomic Location: NC_133888.1:16270181...16285470
NR annotation: XP_044166778.1, mucin-5AC-like, partial [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074628461.1

ATGTACCAAAGAGTCAAGCTAAGGCTGGCGGAATTATTTGTGAATCTGCTGTTCATCGTTCTGCTGCAAAAAGAAACACAAACGGCCAATGCGTTCGGGTATGATTTAGAAAACACTTTTGAAACAGAAGTTAACAGCCTGGTTGAGCTGGAGAAACGAAGACTGCGAAGTCTGAACGAACCCAGTTTCACGGAAAACACCGTGCCAGCTCCAGCCGCCGGTATTAATAAGGCCTTCCTTGAGGAAGCCATTGACGAACTCTCACGCAAGCGCAGTTATGCAGCTGCTGTGGACCCATGTAAACTTCACTTGGACCTCATTCGAAAAACCTGTGACGACAGCAATTCTACTTTGACTAAAAGGGATTGTCTTAGGAGCTGTGTCCCTAAGGTTACAGGAGACATCTGCTATCGTTTGTGGGAGCCAGAAATGTATGGAGAAACCAATATCAAAGTTGAAAGGCGTTGGTACTTTGATCAACAAACAAGAAGTTGTATGCAGTTCGATTTTGGTGGTTGTCATGGTAACAACAACAACTTTCGCGAAAGGAGAGATTGTCAACTTCAAAACGACTTGGAAGTCATGGACGACACGGAATTGTACCTTAGAAGCAATCTCCAACAGATGGAATCTTACGCAGAGTGTTCTGTGTTTGGTAACGCACACTTCAGTACCTTTGACAACAAGACTTACACATTTTACGGGAAATGTGACTACATTCTTGCTGAAGTTCGGGACGATCAGGAAACAAAGTGGCAAATCGTTCTCAGGAACGATAGATACTGTGACCCGATGAAATCCTGTAAGAAGGAACTTTTCATTACTGCTGGAAAACGTATTTTTGAGCTCGGCAAAAGAATGGGAAATACGTTTAAGGTGAAAATGGACAGCGTGGAAATACTGAGATTTCCATTCAAAAAAGAAGGCATTCGTCTGACTTTACTGCCTCCTGATTCACCCAAGAAAATTGTATTTAGATCAATGGTAGATAACGTGGTTATCATATGGGATGGATTGAAGAAGGTTGACATTCGATTTCCTGTCGAAAAATTCAAGGGAATGACCCATGGCTTGTGCGGAAATTTCAATGATAACAGCACCGATGAATTAATGGACTATTCAGGGCACTATCAACCAGACATTAACAAATTTGCAGACAGCTACAAGATCGATGGAGCAACGTGTCAAAACGATGAATACACTGAGACACCATGTTCCCTTCAGTGCACGGAAATTGATGGACCAGGATTTACTGCTTGTCATAGCGTTGTCGACAAAGAGTTCTTCAAAGCGCTGTGTAAGAAGGATAAATGTGCTTATCCGGGAAGTGACAGCGCCAGTGTAACAAATAGGCGTGAAGTGGCTTGTGCTGTTCTCGATGTTTACAGCAGACAGTGCGCTTTAAATAATGTTACCTTGAATTGGAGACGAGAGGATTTTTGCCCAAAATCCTGTCCCGCAAATATGGTGTATAGCGAGACTGCCCCGGCCTGTGCGCGAATCTGCGAAAACAGAGCCCTGACACAATGTAACATAAAGAGTGTGCCTGGATGCACCTGCGCAGAAGGCATGTTTTGGAATGGAGACACATGCGTAAAACCAGAGAGTTGTCCGTGCTACCATGGAGGTCATGCATACAAGCAGGGGAAATTTCGATATGAATCTTGCCAAGTGTGCGAATGTACCCCAAATAATTGGAAATGTCACAGCACCAAATGTAGAGCAAGCTGCTCCGCTCTGGGATTCACCAATTTCCAAACATTTGACGGCAAGCAGTTCGAGGTGTACCCAAAAGAATGCGGGTATACCCTACTGCGCGATTGCAGAGCGACATCGCTGTCGTCAAAATTTTCAATCAAAGTCCAGAACGAGGAATGTCAAGATGTTGCAGATATGCAGTACTGCAAAAAACAGATTATCTACGTGAAATATAGCAGCAAAACACTCGAATTCCAAAGAACCCTCTCCGGAAGTTCGGTACAAATTCAAGTGATCTTTGATGGCCAAAAAATCACCGACTACCTCGAAGAAAATGGCTTGCGCGTGGATTTTGTTGGACTTCACAGCACACAACTATCCAGCGATGATTTTGATTTGATCTTAACCGGGCAAGACCTGTACGTGATGGCTAAAGACTTGCAACCTGGAAGCGACGGAGTGGCAAAGACCTGTGGTCTTTGCGGCACGTACAATCATAACAGCAATGATGACTTCAAAGGTCCAAACAACGCGCCTTCGAGCAGCGCCGACACGTTTTTGCGGTCTTGGCATGATTCAAAAGATAAAGGCACATGCGACGGTATACTTGGAGATGAGGAGCCCACCGTTTTGGTTGATTACTGTTCTCTTTACTGGCAGAATTCAGAACATTCGCAAACTCGAGCAAGTTTCCTGAAAAAAGAGGATGGGCCTTTTAAAGATTGTCTTCTCTCGCACGAATTATACTACAGCCGCGCGATGAAAACCGGCTGCAGGCACCGAGAAAGCTTGTGCGATGTCATCTCTGGTTTTGCAAAGGCTTGCGGCGATGCAGGATATAGCGTTGGAGACTGGAGAACCCAAATATCAGGATGCGTCAAACCGCGCTGTCCAGATGGTTTTGTTTTCAAATATTGCGACGATTCGTGTCCTCAGACATGTGGAGATGTAAAGCATCCGTCAGATTGCAACAACCGACCATGCATCGAGGGATGTTACTGTGAAGGAAATAAAGTGCTTATGGGCGACAAGTGTGTTTTTAAAGAGGAATGCTTTAAAGAAACCCGATCTTGTACAAATGGCAGGCAATGGAAATCAGGTGGCATGACGTGTAAAGGACTGGAAGAGTACAATGTGAATGACACAAAGATTGGATGTCACTGCCCAGAAGGCCTCTACTGGAACGAATTCACCTTAAAGTGCGTGAAGGTGGACCAGTGTGGTTGTGTACAAGACGGAAAGTATTACTATGAAAAACATGTCACTCATCCTATGGATTGCTCAAAGGTATGCAACGGTTCACGAATGTGGGTGGAGGATTCAAGGATTGAGAAGCTACCAGAGTATGAGTGCGCGGCATTTGGTCAAGATAACTACCGAACATTTGATGGCAAATGGATCGCATTTCGTGGCTCAGTTTCGTGCCAGTATGAACTTATGTTCATTAAAAATACTCGAAACAAGGTTACAGTTTCCAACGAACTGTGCAAAGACTCGTTTGAGCTGTTGATGTGTAAGAAAATAGTCATTGAGACTGATGAAGGAAAAGTTGAGCTTAGTCAAAAGGATATTAAAGTCATCGTCAATGACGTGTCAAGGGATTATTTCCCAGGAGATTATCCTGAACCTTGCGGATACAGCACGTTGAAGAACGTAGAGATCTTCAGCAAGGGCTTGTTTGTAGTTGTGCGAGTTTTCAACCCTCATAACCCATTTCAGCCGTTGTATGAGGTCAAATACGACAGAGGTAACCGAGTTTACATCACACCCAGTCTTAAATACAAAGGCACAAATGAACTGTCTGGTTTGTGCGGTAACTTCAATGACAAAGACGAAGACGACAACATAGTTAAGAACAACGACATCGGTGGAGACTCAGCAAAGATTGGAGGCGGCTGGGCCAATGAAGACGGCTGTCAAGATACAGTTTCCACGAGTGCAGATGCAGAAGACGGCACAGGGGCATGTAAAACCTATAAGGACAGGGCAAACTGGGCTTGGAAAGGCTGCAGTGTAATCAAGAGCGACGTGTTTGCGGAATGTCACCCAGTCGTATCGCCCAACAAGTACTTTGACGCTTGTCGTCATGAAACCTGCTTGTGTCACCAGGGAGGGGATTGCGGCTGCTTCTGCTCTGCTGTGGCAAATTATGCAAGAGCGTGTAACCAACATGGAATATCCGTCATATGGCGCCGCGAGGGCTTTTGTGAACTTCCTTGCTGCCGATCTTGTAAAAACCAACCTGGCTACATGGCAAACATCACCATTCCTTCCACCTGCGAACAAACCGGCCAGTGTGCAGCCCAAGGCGAAAGATGCTGTCGTGGTACCCGAGTGGAGGGTTGCGCATGCCCAGAGGGCACTTACTTTGACGGAAAAAAGTGTGTCAATATGACGAATGAATGTGACAAGCCATGTTCATCTAGCAGCTCAGTCACCAGCACCTCAACAACAGCAACAAGTACTTCATCCTCTATATCCATGTCAAGCTACTCAACCTACTCCTCATCAGCGTCTACATCATCCTCACTTTCAACGTCGTCAAGTCTTTCCACACCGACAACGACAAGTGTCTCCACATCGTCTTCAAGTGTGTCCACGTCCACTTCGGTCTCGACATCATCGTCATTATCGACATCATCAAGCATTTCGACCTCTTCCAGGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P98088	Mucin-5AC OS=Homo sapiens OX=9606 GN=MUC5AC PE=1 SV=4
Q62635	Mucin-2 (Fragment) OS=Rattus norvegicus OX=10116 GN=Muc2 PE=1 SV=1
Q80Z19	Mucin-2 OS=Mus musculus OX=10090 GN=Muc2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000873 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF01826 all species →	TIL	Trypsin Inhibitor like cysteine rich domain	Domain	Interproscan
PF08742 all species →	C8	C8 domain	Domain	Interproscan
PF00014 all species →	Kunitz_BPTI	Kunitz/Bovine pancreatic trypsin inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR036084 all species →	Homologous_superfamily	Serine protease inhibitor-like superfamily	Interproscan
IPR036880 all species →	Homologous_superfamily	Pancreatic trypsin inhibitor Kunitz domain superfamily	Interproscan
IPR002223 all species →	Domain	Pancreatic trypsin inhibitor Kunitz domain	Interproscan
IPR002919 all species →	Domain	Trypsin Inhibitor-like, cysteine rich domain	Interproscan
IPR020901 all species →	Conserved_site	Proteinase inhibitor I2, Kunitz, conserved site	Interproscan
IPR050780 all species →	Family	Mucin/von Willebrand/Thrombospondin superfamily	Interproscan
IPR014853 all species →	Domain	VWF/SSPO/Zonadhesin-like, cysteine-rich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11339 all species →	EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004867 all species →	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074628461.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074628461.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

19TPM > 0

2Conditions

23.0Max TPM

1.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	12	1.84	23.00
all_coral_tissue · baseline	38	7	0.65	6.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	23.00
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.95
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.34
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.79
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.76
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.73
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.56
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.39
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.92
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.89
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	2.72
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.50
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	6.32
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.04
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.85
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.40
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.57
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.37
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.29
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.