Gene detail

Detailed information of XP_074628634.1 in Acropora palmata

Genomic Location: NC_133888.1:17108292...17141937
NR annotation: XP_044174645.1, uncharacterized protein LOC114951472 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074628634.1

ATGGCCACGGGATCAGAATATACAGAGGAGCAACTCAACTACTACAGGATTTGTTGTATTACCACTGACGAGTTAACGGACGGTCTGAGAACAATCTTCAAACAGGAATGGGACAACCGATATGCAACTACACTTGGAGAATGGAAAGATGAGGCCAAAAACGGGCAAGACTTCAAAAACGGGGAGTCTCCACAAAACCAAGCAAGTAATCGAGAACTATTAGCAACCATGATCAATGGAAATAGAGCCGAATGGGATTGCTCAATGCTGTTTTACGCTATCCTGTATTCCGATTGTATTGGGCGCGGTCTGAATGTAGTAGTGCGGTCAAACATAGATGATCTGAGAAAATTCCGTTACCAAGACTTTGCTCATTTGCCTCGAGGCCAGATCTCTGAGCTGAAGTTTCAAAGTGCAATCACCAAACTCCAGGGTGTGTTTCAAGCTCTTGGCCTCTCCACTGTAAAGATCCAAGAAATCAGAAATCAAGCAAATTTTTCCATCAGCCATTTGAATAAGATCTTAAAAGAAGTTGACAAGCTCAAGCAGGAAGTTAAAGTCCTTGAAGAGCAATTGCAGAGTGAGACCACGCCCTTTTGCATCCTTCCGCCTCAGCCTCCGCGCGATGTTGCCGCGCGAAAGGATGAGGTGCAACAAACTTTGGGGCCTCAACATCCTGGTGTCGCAACTTCTTATAACAGCTTAGCTACTGTTCTTCGTGATCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTATGCAACAAACTTTGGGGCCTCAACATCCTAATGTCGCAACTTCTTATAACAACTTAGCTACTGTTCTTCGTGGTCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAACTTCTTATAACAACTTAGCTACTGTTCTTCGTGGTCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCGTTCTCTTGCTATTATGCAACAAACTTTGGGGCCTCAACATCCTGATATCGCAACTTCTTATAACAACTTAGCTACTGTTCTTCGTGATCAAGGTGAGCTGAAGGAAGCAAAGGAGTATTATGAGTGTGCTCTTGCTATTATGCAACAAAATTTGGGGCCTCAACATCCTAATGTCGCAACTTCTTATAACAACTTAGCTACTGTTCTTCGTGATCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCGTGTTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAACTTCTTATAACAACTTAGCTACTGTTCTTCGTGATCAAGGTGACCTGAAGCAAGCAATGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAATTTTTTATAACAACTTAGCTATTGTACTTCGTGATCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCATGCTCTTGCTATTATGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAACTTCTTACAACAACTTAGCTACTGTTCTTTGTGATCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTATGCAACAAAATTTGGGGCCTCAACATCCTAATGTCGCAACTTCTTATAACAACTTAGCTACTGTTCTTCGTGATCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAACTTCTTATAACAACTTAGCTACTGTTCTTCGTGATCAAGGTGACCTGAAGGAAGCAATGGAGTATCTTGAGTGTGCTCTTGCTATTAGGCAACAAACTTTGGGGCCTCAACATCCTGATGTCGCAACTTCTTATAACAACTTAGCTATTGTACTTCGTGATCAAGGTGACCTGAAGCAAGCAAAGGAGTATCATGAGCGTGTTCTTGCTATTAGGCAAGAAACTTTGGGGCCTCAACATCCTGATGTCGCAACTTCTTATAACAACTTAGCTACTGTTCTTCGTGATCAAGGTGACCTGAAGGAAGCAAAGGAGTATTATGAGTTTGCTCTTGCTATTATGCAACAAACTTTGGGGGCTGAACATCCTGATGTGGCAACTTGTTATAAAAACTTAGCTACTGTTCTTCGTGATCAAGGTGACTTGCTGGAGGCAAAGGAGTACCATGAGCGTGCTCTTGCTGTTAGGCAGGAAACGTTGGGGCCTCAACATCCTGATGTCGCAAGTTCTTATAAGAACTTAGCCTCTATCCTGAAATATCAAGCATCTGGAGCTGAAGCCGATAAAACGGAAATACAGGGACAGGGGTATTATGAACAGGGCAACTATGACGAAAATTCGAGCGGGCAGACAAGTGAGACGAGAGAAGAGGATTTGCCTCACGAAATCCACAAACTACAGTTGAAAGAAGAACCAGACAAAGTGGCAATATTCGAAGGAACTGTGACCAGCGAGGCCCTCCACTTGGACCTAAATGAAGGGGCCATTCACCTAACCTTCCCTCCCGATAGTGTGGCTGAGCCCACCGATATAATGGTCTATAAATGGAAGTATGGTGCCTGTTTACCTCAACTCATGGAGCATGAGGCTGTCGTGAGTAATGTGATTGAGATCTCTGCCGCCCCGGAAGTTGGGGGCTTAAAATTCAATAGTGAGGTGAAATTGGTTCTTTCCCACAATGCTGCAGGCCTTGAGGGCTACGAGGTGGTTTTGAAAAGACTCATAGATAAGGAGAAGTATCAATGGGAAGAAACAGCTGGATGTGATGATATCCAACAAGTTTCAGATATCGAGGATGATCACCCATGTCCAAATAACGTTCCATATTCCTTTCCTGTGGTACGAGCTGGTATTACAGAGTGTTCATTGTATGTTGTGGTATCTCGGCTGAAGTTATCTAGAAAACACACCATCACAGTCAATGGCGGAACATTCTCCCACCCCGATTATCCTGAAGTGAAAATCACAGTGCCTCAAAAGGCTGTTGCCACCGAAACAAGGCTTTCTTTGGGACGGAAGATTTGTGGTGCTTCTATGCTGTTGATTGCTGGTTGGCTCTTTGCACATGGCAGCATTTCTTGGCAATCAAGTTTGTTCATAAAAGGCGTGGCTCTGATTGTCGTTGCATTGGTTGTGGGTTTCCTTACTTTGTTAGAAGGCCCTTTCACAGTTTCTCAGATCTGTCGGCAATGTTGGATTTTGGTGCAGCTATACAAGAATTGTAGTTATCTTCTGGTGTTGATTGCTGGTTGGCTTGGAGCTTATGGCAGCACTTTTTGGCAACCAAGTTTGATCATAATTGCTGTCGTTCTGACTGTCATCGCACTGGTTATGGATTATCTTGCTTTGTATGCAAGACCCTCCACAGTCTCTCAGGTTTCTTCCTCTTCAGATGCGTCAGTTGCTCCTTTAGAAGAAGCCCCAGAAGGGTGCGCAATCTCGACTTCCAGTGGGAAACTGAAAGTGACTCTTCTGAGTATCGAGTGGGGATCTACTAAAGGAGGACTGTCGACAATTAACCGAGAGCTTGCCATTCAATTGGCAAAGTATGACAATGTGGAAGTCTCTATGTACCTCCCCGCGTTCAAAGACGAAGATAAAAGTGCGGCTGATAAGTGTAGGGTCCATCTACTTAAAGCAGAGGAGAAGCCTGGGTATGATGATCCAATTGACTGGTTGGCCTCTATTCCAAAAGAGCATCAGATGGACGTTGTGATTGGCCATGGGATCCATCTTGGTAAACAGATTCCGCATATAAAGGTATCGCACCCTGAATGCAAATGGATTCAAGTTGTTCATACTGACCCTGAAGAACTTGCCATGTTTAAGAACTATAATGATCCCACTATTGATCCGATTGCCAAAGGTGAGAAAAAGTATGAGGCTGACGTCAAACTCTGCCAAGAAGCAGATCAAGTTGTGGCTGTTGGTCCCAAATTGGCTGATACCTGCTCTCATTTTTGTGACAGGGGAAAAGTCCTTGTTCTTACCCCGGGCATCTTTACAGAGTTTACCAATATTAATCAAGATACTCCAAAAAGAAATGTCTTTCATGTTTTAGTCTTTGGACGTGGTGATAGTAAAGATTTTCGTATAAAGGGATACGATATCGCTGCACGGGCAGTCGCTGAGCTGAAAGATGAAAACCCCCCTTTCAAACTTGTGTTCGTTGGTGCACCCAGTGGAAAAGAGGCGCAAGTAAAACAAATGTTGGAAAACGAAGGCATTTTGCCCCATCAACTTATCGTTCGAAGGGCAAAAAAAAGAGAGCAGCTTGCTCAGCAGTTTTATGGAGCCGATCTTGTCATAATGCCCTCAAGAACCGAAGGTTTTGGTCTAAGTGCACTCGAAGCTTTGTCTGCTGGTCTTCCTCTGCGTGTGAGTGCTAATTCAGGCCTTGGGCAGGCCTTGCGAGAGTTAACCTTTGGTGAGAACGTTGTGCTGAATTCAGAAGATCCTGTTGATTGGGCAAAGGAAATCAAGGCAATTCGATGTAAGAGCAGAAAGTTAAGGCTAAAGGAGGCGATCGAGCTTCGTGAAAAATATGCTAAGCAGTACCAATGGGAAGAACAGTGTAGAAGACTTGTACAAAGGATGTATGAAATTGTTAAATGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1
A0JZ09	D-inositol 3-phosphate glycosyltransferase OS=Arthrobacter sp. (strain FB24) OX=290399 GN=mshA PE=3 SV=1
D2B9F4	D-inositol 3-phosphate glycosyltransferase OS=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / KCTC 9067 / NCIMB 10171 / NRRL 2505 / NI 9100) OX=479432 GN=mshA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0022730 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00791 all species →	ZU5	ZU5 domain	Family	Interproscan
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF15287 all species →	KRBA1	KRBA1 family repeat	Repeat	Interproscan
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR051787 all species →	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR000906 all species →	Domain	ZU5 domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR029317 all species →	Repeat	KRBA1 family repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074628634.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074628634.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

0TPM > 0

2Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	0	0.00	0.00
all_coral_tissue · baseline	38	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.