Gene detail

Detailed information of XP_074628792.1 in Acropora palmata

Genomic Location: NC_133888.1:21480091...21502875
NR annotation: XP_044183169.1, cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074628792.1

ATGATGTCTGGTGCACGAAAACGCCAATATGATGACTTCACTTACGGAGGTACAGAGAAGAAAATAAAAGCTGAGAGTAGGCTTTCAAGTAGTGATTCCGAGGACGAGCTGGGTTCTCCATCGTATGCCAGCTTTCTTCAGTACACAGACAGCAAACCTTTTTACAGCGATGTTGCAAAGAAGCAGATGGAAAGAATGGGTTACAAGGGCGAGGAACGTCTTGGAAAGTCAGAATCAACATACAGTAACTTTGCGCAAAGGCAAATGGAAAGCATGGGTTTTGAGCAGGGAAGAGGCTTAGGAAGACATGGCCAGGGAAGAGCTGATATCATAGAGGCCTCGCAACAGCGTGGAAGACGTGGTCTGGGTTTCAAAGTTGAAGGTTTTGATGATAAAGATTTCACTTGGGAAGAGGAGGATGAGGTAGAGTTTGTGGAGCACAAAGCTTGCATCCCATCCTGTACTAGATCTACTCCAACTAAACAGGAGATGGAGGACTGGGTCAAGATTGACAAGAAAAAGTTATTTATTGATGATGAGACACAATTTTGTAAAGACGATGTCTTAGCTGAAGTTCTAAAGAGCAAGAGTGTTTTTGATGCTCTTTCTGGTGATGAATTTCTTAAGGCAAGAACAAGAGCCAATCCTTATGAGCTGATAAGGGGAGCAATCTTTCAAAACAGGGCTGCCATGAAGATGGCAAATATGGATTCTGCTTTTGACTTTATGTTCACCAGCCCCAAAGATGCTACAGGAAAAGATGTGGTTGGGTCAAATGAACTTCTTTACTTTGCCGATTTGTGTGCTGGCCCCGGAGGATTCTCAGAATATGTCCTGTGGCGCAAAGGATGGCAAGCAAAGGGATTTGGCTTTACACTAGTTGGTGACAATGATTTCAAACTTGAGCAGTTCCTAGCTGGAACACCAGAAACATTTGAGCCACATTATGGTGCAAATAATGATGGAGATATCTTCAATGCAGATAATCTGACAGAATTCAGAAGATTTGTTCTTGATTCATCTGATAACAAAGGAGTTCATTTTGTAATGGCAGATGGGGGTTTCTCAGTGGAAGGTCAAGAAAATATTCAGGAGATTCTCAGTAAACAACTATATCTTTGTCAGTTTCTGTGTGCATTGTCTATCTTGAGACCAGGTGGTCATTTTGTGTGCAAGGTATTTGATCTGTTCACTCCATTCAGCATTGGTTTGGTGTACCTCATGTATCGAGTTTTTGATGAAGTGTACATCTTTAAGCCAGTCACAAGCAGACCAGCTAATTCTGAGAGGTATGTTGTGTGCAAAGGTCTTCGTGAAAACAGCCAAGCTGTTCATGAATTCATGTTTAATGTTAATGTAAGGATAAACAAGCTCAAAAAAGAAGATATACTTGATGTTGTTGAGGTAGTTCCATTGCATATTTTACAGGAAGATGAAGAATTTTCATCTTACATGCTCGAATCAAATAACAGAATAGGAAAGGTACAAGCTAATTCGCTCAAGAAGCTCAGAGCATACGTCCAGGATACAACGTTGTTCGGGCGTTACGACCAAGGAGAAGTCAAGAAAACGTGTTTGGAAAAATGGAAGATTCCAGAGCAAGCTCGGGCGGCTCAAAGGGCACAAGATCCAGATGTGAAGTTTGATGAACTTTGGAAGGGTTTTGATGATGAACATTGTTTCGATTCTGAAGCAACTAAGCTGACGTCCAGAAATATCCAGAACCTGAAATGCTTGTACAATTACAAGTGTTTTGTGTCTGGTGGCGAAAGATGGTTTCTTATGGGACTAGGGCGCAGCAACATCTACAAGTGGGATGGCAAACCAAACTATTTGAGTTCAACAAGATGGCGCAAGTTGGAAAATTTTTATTTGGAGCTTCCTCGGGACACTTTGATTGAAGTGGAAATCATACAGGAGCTAAGAGGGGAGGGAAAGGGACAAAGAAAAGCAATTGCTGTTCATATTGTTGACGCTGTGATTCTTGGAGGAAAAGATGTAAGGAATCTGCATTACCACGAAAGAATGTCAATGGCCGGGTTACTTGTGAAAGCAGTGAACAAACCAACAATCCCAACAATGGTTCCTTTAAGACTCAAACAAGTTTTCCGAGCGGACAGTAATTCACTGAAAGAAATCTTCTCCAAAGTTGAAATGAAAGTCGTTAAAGGAAAGAGCAGAGTACCAAGGGAATGTTTTATGCTGGAGGAAGACCGGCATATTTTACCCAGCGGAATTTACTTTATTAAACGAATTCAAGAGCCTTGGACATACGCCCACAGTCGCTCTGCAAAGCGGTTATATTTCTTTAACAAGGACACAAATGAGGCCACATTCGAGTGTCCGGGAGATTCAGCTGCTTCCTTTAAGTCGTCATTGTGCACTCGGTACTTCTGGTCATGGGAACACGTGGACAGTAACCCTGGTGAAGGAGCAGACGTAGATAAGAAAGCACTTATCGAGTTCTTCTCTGCGGCGCAAAACAACTTTTTGAGTGGTGCACCACGAAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q803R5	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Danio rerio OX=7955 GN=cmtr1 PE=2 SV=1
A2VE39	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Bos taurus OX=9913 GN=CMTR1 PE=2 SV=1
Q8N1G2	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 OS=Homo sapiens OX=9606 GN=CMTR1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004299 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01728 all species →	FtsJ	FtsJ-like methyltransferase	Family	Interproscan
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002877 all species →	Domain	Ribosomal RNA methyltransferase, FtsJ domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR025816 all species →	Domain	RrmJ-type ribose 2-O-methyltransferase domain	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR050851 all species →	Family	mRNA Cap 2'-O-Ribose Methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16121 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004483 all species →	Molecular Function	mRNA (nucleoside-2'-O-)-methyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006370 all species →	Biological Process	7-methylguanosine mRNA capping	Interproscan
GO:0097309 all species →	Biological Process	obsolete cap1 mRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14589	CMTR1, FTSJD2, MTR1; cap1 methyltransferase	EC:2.1.1.57	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.