Gene detail

Detailed information of XP_074628992.1 in Acropora palmata

Genomic Location: NC_133888.1:20619863...20632784
NR annotation: XP_029196310.2, protein PALS1-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074628992.1

ATGTCCACTCTCTCCAGCTGTCGATTTGAGGAGCTGTCTTTTTACAGACTTTTGACATGTCTGGAAGAGATTCGACACAAGCTCGAAGACCGAGAGGATGATTTTATCTTGTGTTCCAGTTACTTTCAAAGTAGAGACTTTCGGAAATATTTCCAGTTTCCGACCACTGCGTCTTCTTCACCTGATCGGATTTTGTGCAGCGATGAAGAATTGACGGCACCTGGCCTTCAAAACAGCAAGAGATCACTTGAAATTGCACAAGAGATTGTAGACACACTTCTTCCTTGCTCTCCTGAGAACACAGAGGGGCAAGAACTGCAGCATATTCTGACGAAACCTCATGTAAAGGGCTTACTGCAGGCTCACGACGCAGTGGCAGCCGGAGATGTCCCTTCAATTTCTGTTAGAGATGAAGTGACAGATATTTTGGGAGCGAATGTCGATATGACCAGGACGGAGAAGCCTCCGAGCAAAACGCTGCATAGCAAGAGTCAAGAAAATGAAGGCGACGATAGCGTTGATGTTGCTGGAAATTCGGATGATAATAATGATGACCATAGTGATGATGATAAAGACAACGATTATATTGACAGCGGAAGTGACAGTGATCTAGGAGAAGAGGCAGACAAAGCTAAAGACGGGGAAGTTAACGAGAGTTCAAGCGAAAGTGAAGTGGACAGTGACAATTCCCATTACAAATCGTCTCACTACATACCTTCTTTCTCTGATAATAAACACGTCATCGAAGTACAAATACAAGTAAACAAAAATGATGAGCTCTTTGGTGCGGCTGACAATTCTCACCACAATGATGGCTCATTTCCAGGCGACAACGATTCAACGAAGCATGCAAACTTCACCCATAATTTTATTGATAGCAAAGAGCAAGAGGCGTGGAACAAGGCAAACCAAGTCGATTCATTTCCAACTAAGAACATTCCAGAAGAAACCAGAACCAGCATTGAGGACGAGTGCGTCATTTTGAAAGATATTCGTAAAGAAACTGACCTTGATCAAGAACATAAGGGACGCAAAAAGGAAAAAATATCGTTTAGCTCAAAGGCCATAAGTGAACAGAATATTGAAGCGCAGGTGACGACAGGCTCTGAAAATGCTACCAAGACTGTTACACTGTTCAGAAATGCTAAAGAAACACTGGGAATAACAGTCAAGGCGGTAAAGAACGGCGATGACAACGTGCGAATTTTGGTGGCAAGAATTCTGAGAGGAGGTCTTGCGGACAACTTTGGATCTTTGCATGTTGGAGATGAAATTCTTGAAATAAGTGGAAAACAAATTCGGGGAATGACCGCCAACGAAGTGGCCGAGATCATGGATGGCATCACGGGAAATGTAGACATCAAGATCAATCCAATCGAGAAAGACAGGAACTGGCTGGCCAAAGAAACCAAGGTTAGCGTAAGAGCATTCTTCGACTACAATCCCCTACAAGATCCGCTGATTCCCTGCAAAGAAGTGGGTGTGGAATTTAGCACCGGTGACATTCTGCACGTGGTTAACGTAGATGACGGTAAATGGTGGCAGGCCAGAAAGGATGGATGCAGTCATGATAAAGCTGGTCTTATTCCAAGCAAAGATTTCCAAGAAAAGCGCCAACAGTTCAACAAAATTTCTACAGCAAGCAATTTTTATTTACAAAAAGACAAAAACGGAAAACGTACATTTCCATTTTTGAAGAGAAGATCAAGTGAATCAAACAAAGTGCTGTGCAATTTCCAACAAGATGTCAAAGTGGACAGCTGGCCTGCTTACGAACCTGTCGCAAAATATCTGGTTAAACCACCGAAAAAGAGGCTGCTTTTACTCATAGGAGCTCCTGGAGTGGGGCGAAACGAAGTTAAGAAGCTACTTCTCACAAACAGTCCCCAAAGCTTCGTAACAACAGTGCCTCATACCTCAAGACACATGAGAAGTCATGAGACAAATGGGAAGGAATACTTCTTCGTATCACGAGAAACCATGGAGAATTTCATTCACAACAAAAAATTGATCGAGTTTGGTGAATACAAAGGCTGCTTGTACGGCACTTCCAAAGATTCCATCACGCGAGTTCTGAAAACAGGGAAAACATGTGTTCTGAAAGTTCAACCTGAGGTGATGCTGTTGTTACGGACAGCTGAGTTTAAGCCGTACTGTATCTACATCAAACCACCTTCTTTGAAGGAGCTACGTGCCTCCAGACTGACAGTACAAGGCAAAACCAAGCCTTCCTCTTCTAAGTCAAACATAAGAACGTTTAAGGAAGAGGACTTACTGGAGATGATAAATGCATCGAGAGAACTTGAAGAACACTATGGAAAATTGTTTGACCTTACAGTTGTTAACAAGAACATCGACGAAGTCTACGACAGAATTACAGAAGCCATGGATAGACTCGAGCAAGAGGAGCATTGGGTTCCAGAGGACTGGGTACGAATGGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P0D7	MAGUK p55 subfamily member 7 OS=Danio rerio OX=7955 GN=mpp7 PE=1 SV=1
A8KBF6	MAGUK p55 subfamily member 7 OS=Xenopus tropicalis OX=8364 GN=mpp7 PE=2 SV=1
Q5T2T1	MAGUK p55 subfamily member 7 OS=Homo sapiens OX=9606 GN=MPP7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan
PF02828 all species →	L27	L27 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR004172 all species →	Domain	L27 domain	Interproscan
IPR020590 all species →	Conserved_site	Guanylate kinase, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR008144 all species →	Domain	Guanylate kinase-like domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR050716 all species →	Family	Membrane-associated guanylate kinase	Interproscan
IPR036892 all species →	Homologous_superfamily	L27 domain superfamily	Interproscan
IPR014775 all species →	Domain	L27 domain, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23122 all species →	MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074628992.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074628992.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

51TPM > 0

2Conditions

16.4Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	31	3.53	16.41
all_coral_tissue · baseline	38	20	2.37	13.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.41
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.67
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.62
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	8.22
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.11
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	7.05
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.41
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	6.05
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.79
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.51
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.40
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.25
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.10
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	5.03
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.96
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.92
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.64
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.59
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.49
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.12
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	4.08
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.96
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.96
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.59
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.49
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.38
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	3.17
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.99
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.86
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.47
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	1.25
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.53
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.70
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	7.11
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.84
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.82
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.81
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	5.23
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.73
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.66
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	4.27
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.37
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.20
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	3.19
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.80
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.53
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.51
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	2.45
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.97
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.85
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	1.34
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.