Gene detail

Detailed information of XP_074629201.1 in Acropora palmata

Genomic Location: NC_133888.1:2653964...2681798
NR annotation: XP_029202657.2, uncharacterized protein LOC114966840 [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074629201.1

ATGTCTGTACAAGTGACAAATCCTTTAGATTTATGTACAAGTAAAGGCATGTCCCCAATAACGTTTACACCCCACTCGGCTGGGGGAGCAGAACTGCCAAATTCTCGTTCTAAGAATGTTGGATCACCACAAAGAATGCCAAATGGATACACACCTCCAAAATCCAATGGAATTTTGTCGCCTAGGAAATCATCCAAGAGATTCTTCCGCAGACCAACCCTTGAAAAAAGCCCACCCTCGGACACTTCAAGTGCACAAAGCAGTGACAAGAAAAAGCAATCTACTCAACCAAAAGTTGAGATTATTTATAGAGAAGCTCGGCACTCTAGAGAGTCTGAAGAATCCAAAGTTGATGCAATCAAGAGAACGTTTGAAAATGATGGATCGCCACGTCTGCGACCTACTTCGCTGCACTCTGGAGAAAGAACGCCATCAACAATCTCAGATGAGTTTGTGGCTGGGTTACTCAGCACCCAAGAGAAAGACATCAACATGAATCGCATTTCTACTGGCTCAAGCACTTGCAGTCATACAGAGAGAGTTGTGCAGGAAATTTTATCCACTGAACAGGCTTATGTTCAGCATTTACATGAAATCATTGAGGGTTATTTGAAGAAAATGAGGAGCAAAGAGTCACCATTTCCAGCACAAGACATCAAGGATTTATTCATGAACATAGAGGAAATATATGAGTTCAATAAGGAATTTTTAACTGAGCTAGAAGAGTGTGGTGATGATCCAGTTGATATTGCTAGCTGTTTTGTGTCAAAGGAGAAAGGCTTCAAGACATACACAGACTACTGCACAAATTACCCACTGTCTATGGAAGTGTTAACAAAGTCCACGCAACATAAAAAGACAGCAGACTACATTAAGAAAATTCAGATTCAACTTGGGCATTCTCTTCCGTTGGGATCATACCTGTTAAAGCCTGTGCAGCGCATCTTGAAATATCACCTTTTACTGCAGGACATTCAAAAGCATTTTGACAAAGAAAATTTTCCTGAAGACTGTGAAGTAATTTCTGATGCTTTGAATGCCATGACGGGTGTGGCTCATCACATAAATGAGATGAAGAGGAAGTACGAAGTTGCAGTGCATGTGCAGGAAATCCAAAGCCAGATGTCAGATTTTGAGGGTCCAGACCTTACAACATATGGGAATCTTGTCTTAGAGGACTCCTTTAGATTACATGGTTCAAGAACAGACAGATATCTTTTCCTCTTTGAGAAAATTCTACTCATAACAAAACGGAGAGAAAGTGGCTACTCTTGCAAGGCCACACTGATGTTGTCAAACATGATGTTGTTGGAGTCAGTACCCAAAGAGCCTCTGTCTTTTGAGATAATACGCTTTGATAATCAGAAAACCACTTACACATTTTTGGCGAGAAATTCTGACCAGAAGCGTAAGTGGACCTTGGAATTGAAAGGACTGATCGTTGACAGTCTAGCTGCATCAGTTCCCAAAGAGGCCAAAGACCTCATTTTAGGAAAGGAGAAGATGGAGGTGGACAAAGAAAAATCAGGAACTTTGGAAGGCAAAAAAAGAGCAGGATCTTTTCACAAACGTAACAAGGAAAAACCCAAGATAACAAGAACAAGTTTTGTGAAAAAGAAACCGGAAATGAACAAAAGGCCAGAAGATGAATGTGAACCCAGATCTCCTTCGGACGCCTACTCATCAGATGACGACAAGATATCAATTCGCCCGCCCTCCCTCAACAGCGACAGAGAGGAGGATATCGATGAGTGTGAAGAAATAACGGAAGACGACTCATTGCTGTCCCCTGACATAAGCATTGCCAGCCAAGGGGATGCTGAGCTGGCAATGGAGTCGACTGATTTGGAGGAGGAGGACAAAGAGCAAAATGATCAAGCGCCTGATAAATCTACTGAGGAAGTTGCTCTGTATGCAATAGAAGATGCTCAGGAGGAGATAGTAGGGACTGCTCACGGTGATGTTGTTAAAGACGAAGCAAAGGAGGAAGAATCCTCACCTGAAAAAGATTTAACTCAAGAAATGAACGATGTGAAGAGAACGCCTCCGGTTTTAAGGAAACGTTCCAACAGCGTCTCGAAATGCGAGGGTATTAAAAAGGCTTGCAACAAAAGCAGCACATCTTCCATGTCTGATGACGAGGGTGCGAGCGAGCGAGTGAGCTTGGACTTCACACGTAGAGACATTGACAGCCCAAGGATGATGAGGCGATCTTCAAGTGGGCACCGTCTTTTGGAGGCAATGTTGAGCTCAGAGAGGTCATCGTCAGCTTGTGACCTACGCTGTATCGAGGAGGATTCCTCTTCGGTGTTTAGCTGCAGCGAGATAACAAGTTTGCACGAATACTCTGCGATAACTACAACAGTAAGAAAAGTGTCCCGCGCATTCAGTGGTTCTTCATCCCCAGCGGAGAAAAGCCCCTCAAGTGAGATTCAGATGCGAACTGCGCAGACGCGGTACATCGTAGAATCAGCGAATTCTCATGACAAAAGATTGTCCCTCTCGAGTTCAGATTCCTCGCGTAATAATCTGGAAGAGCTCCTTGCGTCGATAGACAGGGATCTGGACGAGACTCGTCGAACCATTTCTTGTGCGCAATTATTAGAATCTGCGCTGCTCATAAAGAATGATAGTCAACCGCTAGCCACTGAAGGGAAGCCCACGGATAGCCCACGACGCAGGCGCCGTCAGCGAATTGTTGATTTTTCATCGGAAAATGGCGATGAGAGCCCGACTGGCAGTAAGAGATCTAATCTTCGGGAAAAAAGAAGGAGAAGCTTGCGTAAAAGTTGTGACCAGGACGAAATGGACTCAAATGTAAAAGAAAGTCAGAAACCAAATGAAACAGAATGTGAAGACTTATCTGAAGTCAAAAGCAGTAGCATCGAGGAAGAGGAACTGCTTCACGAAGGAGAGACTGTGACAAAACCAAATGCAACACAAGACAGCCCTATGGAGGCTGTTCCGCAGGAAGACCAAGTGGAAAAAGACTCTCAGGTGCACAACAACCACGTGGAGTCAAAATCACAGGACGACCAGGCAGAGGAATTCCCTCGAGCGGAGAATACCCTTAAAAAGAAACGTGTCTTTGAACTTTTTGCTGAAAGCAACAGTGGAAAGGGCGGACAACGAAGCGGCAGCGGCGTACTATCTTCGGAGACTGTGACAAATCCTGAACAAACAACATTGAGTGAGCCGACATTGCCGAGTGTATATCAGTTGGCGAGACAGTATTCGCAACTAGTTAGTGATAAACAGGCTGTAGAGCAGATACACATGAGCAGCAAAGCTAAACTTTGTAGCAAAGCGGGGTCAGTTTTATTAGAAAAGACTAACGAAGGGACCTTGGACCGCACCCCAAAGATTAAGATTGAGAAAATCACGAAGGTGTCTTTGACCAGTTCTCCTATTGAAAGCTACAAGCTCGTGAGACGTCGAAGAAGGCGCTCCTCTCGGCATAGATCGGATGATATTCGACGCCAGAGCTGGTCGGTTGAGAAAGTGAAACCGGATCAAGAGGAACCGCGAAAGGCAAGGCCGAAGAGTGCGTACGACATGGATGCTCTAGAAGCCACAATAGCCGAGAACTTAGAACAGATTGAAGAAGGTCTAGAGCCTATGTTAATTGCAGGATTGGACCAGGATGATTTTGTGGTGCGAGGGCTGGTTCAGCATTTAGTGAAGAAATTTAATTCTCAAAAAGTCGAAAATAGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULL1	Pleckstrin homology domain-containing family G member 1 OS=Homo sapiens OX=9606 GN=PLEKHG1 PE=1 SV=2
Q4VAC9	Pleckstrin homology domain-containing family G member 3 OS=Mus musculus OX=10090 GN=Plekhg3 PE=1 SV=2
A1L390	Pleckstrin homology domain-containing family G member 3 OS=Homo sapiens OX=9606 GN=PLEKHG3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003579 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR043324 all species →	Domain	PKHG1/2/3, pleckstrin homology (PH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45924 all species →	FI17866P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_074629201.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074629201.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

78TPM > 0

2Conditions

100.9Max TPM

32.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	44	35.90	100.90
all_coral_tissue · baseline	38	34	27.26	50.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	100.90
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	75.46
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	74.03
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	70.84
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	62.02
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	58.74
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.46
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	57.36
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	56.90
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	55.73
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	52.29
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.94
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	51.80
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.62
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	46.30
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.47
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	45.30
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	44.18
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.65
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	43.03
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.88
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	42.32
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	41.50
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.20
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	38.01
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	25.64
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.74
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	24.16
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.88
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.58
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.07
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.61
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.93
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.65
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.99
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.43
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.51
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.88
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.51
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.47
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.25
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.19
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.00
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.13
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	50.59
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	43.14
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	42.39
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	41.17
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	40.72
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	39.93
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	38.19
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	37.10
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.88
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.61
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.59
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	36.05
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.53
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.52
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	35.44
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	34.15
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.93
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.82
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	33.13
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.84
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	32.03
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	31.07
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	28.92
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	27.91
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.84
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.10
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.20
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.69
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.08
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.59
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.42
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.69
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	11.52
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.99
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.