Gene detail

Detailed information of XP_074629360.1 in Acropora palmata

Genomic Location: NC_133882.1:25215661...25235420
NR annotation: XP_044178478.1, phospholipase A-2-activating protein-like [Acropora millepora]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074629360.1

ATGTCGTACAAATTAAGTTGTGTACTTCGTGGTCACGAGCTTGATGTTAGAGCTCTTTGTCCCGCTGTTTTTCCCGAAGGAGGAATTATAACTGCTTCCAGAGATCGAACAGCACGTCTGTGGATTCCTCGCGAAGGCAAACTTGGCTTTGACGAGGGACATGTACTGAGTGGACACGAAAAATTTATATCAGCAGTGTGTGCAATTCCTCCATCGGACAAATATAAACATGGTCTCATAGCTACCGGTGGTCACGACAATGTCATACTTGTTTGGACATTGGATTCTCTGGAGCCGCTTCAAAGATTAGAGGGTCACACTGGACCTGTTTGTTCACTGATTGCTGGAAAGTTTGGAACTCTTCTTTCAGGATCATGGGACAAGACTGCTGGCGTATGGATAGGAAGCAGATGTATGATGACATTACAAGGCCATGAAGCCGCTGTGTGGGCAGTCCAAATGATGCCAGAGCATGGGCTCATGCTAACAGGTTCAGCCGACAAAACAATAAAGCTATGGAAAGCAGGAACTTGTCAAAGAACCTTCACAGGACACAGTGACTGCGTCAGGGGTTTGGCTGTGCTATCAGCAGTAGAGTTTGTGTCATCTTCAAATGATTGTACTATCAGGAGATGGCTAAGCACAGGTGAATGCCTTCAAGTTTACACAGGACATACAAGCTTCATCTACAGCATAGCCACTCTTCCTAACGAGGGAGGAGGCTTTGTTTCTGTAGGGGAAGACAGAACTCTGCGAATATGGAAAGGAGGAGAGTGTTTTCAGACAATTACTCTACCCGCTCAGTCCATCTGGAGTGTCACTTGCTTAAATAACGGAGACATTGTCACAGGATCAAGTGATGGAATTGCTCGAGTGTTCACCTCCTGTGTTGAGCAAGTGGCCTCACAAGAAGAACTTGAGCAATTTAATGCTGAAGTTGCAAGTCATGCTATCCCAGCTGAGGCGGCCAGTGGCCAACTAGGCGATTATAAACTTGAGGATCTTTCAGGACCAGAGGTCCTTCTAAGGCCAGGTAATGAGAGTGGTCAAACAAAACTTATCAGACGGGGAAATATTATCGAGTGTCATCAGTGGAATGGCATGGAAACCAGATGGGAAAAGGTCGGTGAAGTAGTTGGATCCGCAGGAACAGAAGGTGCTTCGCGACAGAGCAACAAACAAAATTACAATGGAAAGGAATACGACTTTGTGTTCGATGTTGAGATACAGGAAGGATCCCCGCGATTGAAGCTTCCATATAATTTAACGGATGATCCGTGGATGGCAGCTCATCAGTTTTTGGAGCGGAATGGCTTGAGTCAGATGTTTTTAGATCAAGTTGTAGATTTCATCCAGAAGAACACAAAAGGAGTCACAATAGGACAGCAGACAGCCGCAAGCGGAGATCCGTTCACAGGAGGGGCGAGGTATATACCATCTACAACACCTTCGCAACAAGCATCTAACCCCCCTACCGGAGGAGCGAGTGGAGCAGTCGATCCTTTCACAGGTGGTGGTAGCTACAGGCCGTCATATTCTCAACAGCAGCCGGCAATGGGAGGAGGAGGAGGCCTTGATCCTTTTACAGGTACCAATAGTTACAGATCAGGACAGACCACGACGCCGAATCACACCCCCGCAGGTGGCCAAAATCTCTACTTTCCTAAAACATCCTTTGTGTCATTCGACAGCGCTAACATCGCTGCCATTGGAGGAAAACTAAAAGAATTTAACGCTACGTTAGACGAGGAGCAACAACTAGGAAGTGAAGAACTTAAAACATTATTAGATTTATTGGAGGACGTAGCAAGCTCTGATCAGTCTAGATCGCCGAAAATGGAGCACCTGTCGACTCTTGTAAAAGCGCTGAAGTGGCCTTCAGGTGTTCTTTTTCCAGCCTTAGATATATTCCGCCTGGCTGTGCGGTTTTCTTCCGTTGCGAAACTATCTTGCAGTGGGTCTGAGGGAGATAATCTCACCGCACACTTACTCTCCTGTACAAGGGATGGTAATCCCCAAGCGAACGTTCTGTTGTCATTTAGGATATTCTCAAATATGTTTTTGTCCGAAGAGGGTGCAGCTTTAACACTAAGACACAGGGAGAAGATCGTCGAACATTTATCCCCGTGGTGTAAATGCTCCAACAAGAACATCCGTGTATCGCTATGTACTATCCTACTCAACTTATCTGTGCTGTTACGAAAGCATTATGATTTTGAGGCAAAGACCCAATGTCTAACAACTTTAGCTGGAATATTGGAAAACGAAACGGATAATGAAGCCAGATTCAGGTCTCTTGTAGCAGTTGGAACTTTGATATGCGGTGATGCAGACGTTTTATCCTTAGCTCAATCACTAGGAATGGAAAGTTCATTAAGAGAGTTATCATCTATTACAGATCCCCTCAAGGTTGGCGATTGCGCGTCAAAAGTGTTAGCTGTTTTGTCGGAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54319	Phospholipase A-2-activating protein OS=Rattus norvegicus OX=10116 GN=Plaa PE=1 SV=3
P27612	Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4
Q9Y263	Phospholipase A-2-activating protein OS=Homo sapiens OX=9606 GN=PLAA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004852 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08324 all species →	PUL	PUL domain	Repeat	Interproscan
PF09070 all species →	PFU	PFU (PLAA family ubiquitin binding)	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR013535 all species →	Domain	PUL domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR015155 all species →	Domain	PLAA family ubiquitin binding domain	Interproscan
IPR038122 all species →	Homologous_superfamily	PFU domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849 all species →	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010992 all species →	Biological Process	ubiquitin recycling	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14018	PLAA, DOA1, UFD3; phospholipase A-2-activating protein	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.