Detailed information of XP_074629463.1 in Acropora palmata

Genomic Location: NC_133888.1:10505728...10564071
NR annotation: XP_015771040.1, PREDICTED: heat shock protein 75 kDa, mitochondrial-like isoform X1 [Acropora digitifera]
Species Acropora palmata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q12931Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens OX=9606 GN=TRAP1 PE=1 SV=3
Q5XHZ0Heat shock protein 75 kDa, mitochondrial OS=Rattus norvegicus OX=10116 GN=Trap1 PE=1 SV=1
Q9CQN1Heat shock protein 75 kDa, mitochondrial OS=Mus musculus OX=10090 GN=Trap1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004497 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00183
all species →		HSP90Hsp90 proteinFamilyInterproscan
PF13589
all species →		HATPase_c_3Histidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036890
all species →		Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR001404
all species →		FamilyHeat shock protein Hsp90 familyInterproscan
IPR037196
all species →		Homologous_superfamilyHSP90, C-terminal domainInterproscan
IPR020575
all species →		DomainHeat shock protein Hsp90, N-terminalInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11528
all species →		HEAT SHOCK PROTEIN 90 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006457
all species →		Biological Processprotein foldingInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0051082
all species →		Molecular Functionunfolded protein bindingInterproscan
GO:0140662
all species →		Molecular FunctionATP-dependent protein folding chaperoneInterproscan
GO:0005743
all species →		Cellular Componentmitochondrial inner membraneInterproscan
GO:0019901
all species →		Molecular Functionprotein kinase bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09488TRAP1, HSP75; TNF receptor-associated protein 1-Chaperones and folding catalystsko03110deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074629463.1 across 84 RNA-seq samples of Acropora palmata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples
0TPM > 0
2Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
all_coral_tissue · exposed 46 0 0.00 0.00
all_coral_tissue · baseline 38 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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