Gene detail

Detailed information of XP_074629574.1 in Acropora palmata

Genomic Location: NC_133882.1:17106274...17131626
NR annotation: XP_029207286.2, N-alpha-acetyltransferase 35, NatC auxiliary subunit-like [Acropora millepora]
Species Acropora palmata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_074629574.1

ATGGCGGACATGGAGACTCAAGAAAGTTTGCCTCCTGACAGCTCTTTGAACGATCCAGATGATGCTGAAAATAGTGATGAACTTTCAGTTCTAACAAACGAAGTTGTGAGCGGTGTAGAATCTATCACAAAGGCACTGTCGAAGTTGGGTGCCAATGAACCTCAGTATAACTGGGAAGATATCACGGAGGATTTTACTGCTGCTGCATCAGAATTGAAACTGGGTGAACTGGTGCATGACAACATATTTGGATTATTTGAAGCTATGTCAGCTATTGAAATGATGGACCCAAAAATGGATGCTGGGATGTTGTGTAACAAAGCAAAGAAGGTGCTTCAGTTTGAGCCTGCAGTCAAGGCAGGGTTATTGAAAATTAAAGATTTCTCTGCTGAAGAGCTTATAGGTATCCTGGATGAGTTGATAGCTTGCTTGGTAACCTGGCTTGATGGTCATTCTTTAGTGCAAACAGTATTTACATGTCTGTACATGCACAATCCTTTTATTATTGAAGATCCTTGCCTTAAGGCTTTCTGTATTGCTATGTTGAAGACTTGTGACACAATCAAGACTATTGTCAACAGAGCTCAGGTGTTTGAAGAGGAAGATTTTCAAGCAATGACTTATGGCTTTAAAATGGCATCTGAAGTAACAGAAACAAGGACAGCAGGAATGCTGAAGGAGGCAGAGGATGAAATTTTCAGGAAAGTCAAGCCATTGAAGAATCAGTTGAGAACGAAGCCAGACTGTGATTCAGACTTAATCCAGAGGCAAATAAGAGAATTTGAAGCTGTCTTGGCGAGATTGAAGTTCTTCAAAGCATTCTACCTAGCGCTTGTTTCGCTTGAGAAGTCAGAGGGATCAGGTGTACCAACTGCTAAGCAGTTACTAAGCACTGCTTTAACTTTGATCGGAGCGTTCAGAAAAACAATCGAAATGGGAATTCAACCTTTGCCATCTGACGATAACAAACAAGGGACAATTATGGGGTTTGAACCACTTGTTAATCAACGACTTCTCCCGCCGTCATTCCCAAGATACACTGCAATCTTCAGTCGAGAGCAGGCCATTGATTATACAGAACAAATGGTCAAACGCTTTCTGCATATCTGTGAGGTGGTCAACCACGGATCGCTCCATATCATTATCGATTTTATTTCCGAATTTAGTAAAAAGAGGCCGTGCGTTTTAACGCGTTCATATTTACAGCTTCTTGTCTGGCAGAACAACAATCTCTTAGGGAAAGCAGACGCAATAAGGGAGGCTATCAGAACATTCAACAGTCCTCCATCAATATCTGAAAAGTCTTCGTTGAGCGGTAATGCCATGGCGGTTGAACTAGCCGATAGCTTTATCAGCAGAGCAGCCAGGCCAGTGAAATCGATTATTCACGCTCTGGGCCACAACCGCGCTCGACAAAGAGATAAGTTGGCGCATCTCTTGGAGGAATTTGGTGCTCTTCAAGACGAGGCTGATAAAGTGGACGCACAGCTACACACTTTGCTTGTCAAAGTCGAACCGCAGCGTCAGCATTTTGCCTGTTTTGGCTCATGGGTGTTGTATCACACATTGAACATCATGATTCAGTATCTGTTGTCTGGATTTGAACTGGAGCTCTACAGTCCACATGAATACCACTACGTGTTTTGGTACCTCGAATTTCTGTTTGGTTGGCATATGACATGTCTTAACAGAGCCGAGAAGTTGTTGCAGGCGCAAGAAGCTGCATTGGAGCAAAAAAGCGGTCGCAGCGGAAAGAAGAACAGGAGGAAGAAGAAAGCAAGTGAAAAAGCCATCCTAGAACATCAGGGAATGTGGCACCTGTATCAAGGAATGAGGCATTTATGTCAAGGCTATCTCCGGGCTCTCGAAGCATTTGATCTGCAAGGGAAAACAAGAAAACCCGCGGACAAGTTTGGTTCAGAGAAGTTGCGATATGAGCGTCGTTTCCTGCCATTTCAATCCGTGGATACTCCGCAACCCATGTTTTATAATCAATACAGAGAATACAGAAACTTGTCCAGGATGAACGCATCTCAGAGCATCGAACTGTTTTTTAGGGCGTCAGAGGCCTTTCAACAGGCCAAGACCATATTTGAAATGATCAGTAATGTTCACAGTGAGGTTGCGCTGTTGTTAAAAGTCGCAAAAACAAATTTTGTGGTCGCAAAGCTGGCAGCTGGGGGCCATAAGAAGGATTCTATGAATCCTCTAGAATTTGATTTTCAGTGTCATCGTGCCTTTCCAATCATCAAGCTTAAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VZE5	N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Homo sapiens OX=9606 GN=NAA35 PE=1 SV=1
Q5RBT3	N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Pongo abelii OX=9601 GN=NAA35 PE=2 SV=1
Q4R708	N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Macaca fascicularis OX=9541 GN=NAA35 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004498 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04112 all species →	Mak10	Mak10 subunit, NatC N(alpha)-terminal acetyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007244 all species →	Family	-alpha-acetyltransferase 35, NatC auxiliary subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21373 all species →	GLUCOSE REPRESSIBLE PROTEIN MAK10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006474 all species →	Biological Process	N-terminal protein amino acid acetylation	Interproscan
GO:0017196 all species →	Biological Process	N-terminal peptidyl-methionine acetylation	Interproscan
GO:0031417 all species →	Cellular Component	NatC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20823	NAA35, MAK10; N-alpha-acetyltransferase 35, NatC auxiliary subunit	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_074629574.1 across 84 RNA-seq samples of Acropora palmata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

84Samples

67TPM > 0

2Conditions

25.9Max TPM

13.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
all_coral_tissue · exposed	46	36	12.58	20.99
all_coral_tissue · baseline	38	31	15.34	25.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR8800088	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.99
SRR8800105	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.76
SRR8800100	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.60
SRR8800068	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.56
SRR8800077	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.34
SRR8800097	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	20.07
SRR8800061	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.12
SRR8800099	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	19.01
SRR8800051	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.33
SRR8800079	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	18.11
SRR8800080	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.45
SRR8800036	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.23
SRR8800073	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.08
SRR8800047	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	17.03
SRR8800091	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.68
SRR8800071	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.38
SRR8800038	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.31
SRR8800027	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	16.19
SRR8800083	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.87
SRR8800062	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.50
SRR8800065	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.39
SRR8800040	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.20
SRR8800063	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.20
SRR8800053	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	15.14
SRR8800087	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.52
SRR8800058	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.51
SRR8800060	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.30
SRR8800034	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.26
SRR8800107	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.17
SRR8800093	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	14.13
SRR8800095	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	13.19
SRR8800044	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	12.50
SRR8800045	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	11.81
SRR8800033	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.56
SRR8800089	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	10.46
SRR8800026	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	9.92
SRR8800028	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800029	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800039	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800042	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800056	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800066	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800075	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800086	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800092	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800094	all_coral_tissue · exposed	all_coral_tissue	not recorded	exposed	SRP189781	0.00
SRR8800106	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	25.92
SRR8800069	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	24.05
SRR8800096	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	23.00
SRR8800101	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	22.43
SRR8800067	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.61
SRR8800081	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	21.04
SRR8800078	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.98
SRR8800057	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.97
SRR8800037	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.59
SRR8800084	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.50
SRR8800049	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.34
SRR8800050	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.28
SRR8800041	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	20.08
SRR8800109	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.82
SRR8800072	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.72
SRR8800074	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	19.03
SRR8800108	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.91
SRR8800103	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.61
SRR8800043	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.46
SRR8800102	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	18.45
SRR8800098	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.71
SRR8800082	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.43
SRR8800076	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	17.32
SRR8800059	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.93
SRR8800048	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	16.86
SRR8800064	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.91
SRR8800104	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	15.21
SRR8800070	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	14.28
SRR8800031	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	13.85
SRR8800085	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	12.83
SRR8800090	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	9.82
SRR8800030	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800032	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800035	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800046	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800052	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800054	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00
SRR8800055	all_coral_tissue · baseline	all_coral_tissue	not recorded	baseline	SRP189781	0.00

Source: CnidoSite RNA-seq expression matrices (APALM_TPM, StringTie quantification over 84 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.