Gene detail

Detailed information of XP_074629624.1 in Acropora palmata

Genomic Location: NC_133888.1:20435533...20454459
NR annotation: XP_015758235.1, PREDICTED: forkhead box protein A2-A-like [Acropora digitifera]
Species abbreviation APALM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O42097	Hepatocyte nuclear factor 3-beta OS=Oryzias latipes OX=8090 GN=foxa2 PE=2 SV=1
Q7T1R4	Forkhead box protein A2 OS=Xenopus tropicalis OX=8364 GN=foxa2 PE=2 SV=1
Q91765	Forkhead box protein A2-A OS=Xenopus laevis OX=8355 GN=foxa2-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000451 (this species only)
Transcription factor family	Fork_head · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09354 all species →	HNF_C	HNF3 C-terminal domain	Domain	Interproscan
PF08430 all species →	Forkhead_N	Forkhead N-terminal region	Family	Interproscan
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018533 all species →	Domain	Forkhead box protein, C-terminal	Interproscan
IPR047388 all species →	Domain	Protein fork head-like, forkhead domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan
IPR050211 all species →	Family	Forkhead box domain-containing protein	Interproscan
IPR013638 all species →	Domain	Fork-head N-terminal	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11829 all species →	FORKHEAD BOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0019904 all species →	Molecular Function	protein domain specific binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08035	FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.